Gene HMPREF0424_0471 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0471 
Symbol 
ID8709543 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand- 
Start bp515773 
End bp516861 
Gene Length1089 bp 
Protein Length362 aa 
Translation table11 
GC content51% 
IMG OID646482586 
Productglyceraldehyde 3-phosphate dehydrogenase, C-terminal domain protein 
Protein accessionYP_003373713 
Protein GI283782959 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0057] Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 
TIGRFAM ID[TIGR01534] glyceraldehyde-3-phosphate dehydrogenase, type I 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGCGCACGA GGTCTCACTC AAGGGAGAAC CACATGACAG TCAAGATTGG TATTAATGGT 
TTCGGTCGCA TCGGTCGTCT CGCATTCCGT CGTATTTTTG AGCTTCAAGC TCGCGGCGGT 
CAAGCAGGTG ACATCGAAGT CGCAGCCATC AACGATCTGA CCACCCCTTC GATGCTCGCC 
TACTTGCTCA AGTATGACAG CACCCACGGC ACATTCCGCC ACGATGACGG CACCCCAGTT 
GAGGTAACCT CCACCGAAGA CGCAATCGTT GTAGATGGCA AGACTTATAA GGTTTACGCC 
GAAAAAGACG CAAATAACAT TCCATGGGTT AAGAACGATG GCGTTGAATT CGTTCTCGAA 
TGCACCGGTT TCTACACTTC TGCAGAAAAG TCCCAGGCTC ACTTGAACGC AGGCGCTAAG 
AAGGTTCTTA TTTCTGCTCC TGCTAAGGAC GAAACCACTC CAACAGTTGT GTTCGGTGTT 
AACCACGAAA TCTTGAAGGC TTCTGACAAC ATTGTTTCCG CTGGTTCTTG CACCACCAAC 
TCCATGGCTG CAATGGTGAA GTTGCTTCAA GATAACTGGG GAATCAAGTC CGGCTTCATG 
ACCACAATTC ACGCCTACAC CGGCACTCAG ATGATTCTCG ACGGCCCACG CGGCTCCAAG 
CCACGCAACA ACCGTTCCGC AGCTTGCAAC ACCATTGAGC ACTCCACCGG CGCTGCTAAG 
GCAATCGGCA AGGTTGTGCC AGAAGTTAAC GGCAAGCTCC AGGGTCACGC ACAGCGCATT 
CAAGTTCCAG ACGGCTCTGT TACCGAGTTA ACTACTGTTC TTGAGAAGCC AGCAACCACT 
GAAGAAATTA ACGATGCTTT CAAGAAGGCT TTCGAAAACT GCGAGTACTT CGGTTACAAT 
GCAGACAGCA TCGTGTCTTC TGACATCATC GGCGACACCC ACGGTGGCGT TTTCGATCCA 
ACTCAGACCG ATGTGAACAC TGTTGACGGT GTAACTTTGG CTCGTACCGT TACCTTCTAC 
GACAACGAGT ACGGCTTCAC TTCCAACATG ATTCGCACCC TTCTTTACTT CGCTGAAATC 
TCCGAGTGA
 
Protein sequence
MRTRSHSREN HMTVKIGING FGRIGRLAFR RIFELQARGG QAGDIEVAAI NDLTTPSMLA 
YLLKYDSTHG TFRHDDGTPV EVTSTEDAIV VDGKTYKVYA EKDANNIPWV KNDGVEFVLE 
CTGFYTSAEK SQAHLNAGAK KVLISAPAKD ETTPTVVFGV NHEILKASDN IVSAGSCTTN 
SMAAMVKLLQ DNWGIKSGFM TTIHAYTGTQ MILDGPRGSK PRNNRSAACN TIEHSTGAAK 
AIGKVVPEVN GKLQGHAQRI QVPDGSVTEL TTVLEKPATT EEINDAFKKA FENCEYFGYN 
ADSIVSSDII GDTHGGVFDP TQTDVNTVDG VTLARTVTFY DNEYGFTSNM IRTLLYFAEI 
SE