| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0469 |
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| Symbol | |
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| ID | 8709001 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 514136 |
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| End bp | 514813 |
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| Gene Length | 678 bp |
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| Protein Length | 225 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 646482584 |
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| Product | sigma-70 region 2 |
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| Protein accession | YP_003373711 |
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| Protein GI | 283782957 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGAGC AAATCGAGAA GACAAATGTT ATGTGCTCTA AAAGCGTAAG AGCTAAAAAA
CAAAGTGCAA AAAATTGTAA TGCTCGCTTA TTTAGTGATC GTTTAGTAAA TACTAAGCAA
AGTTCTGCAA TGGAAAGTCG ACGCAAAAGA TTTGAACAAC TTGTATCTAC TTGCGTTGAT
TCTTTATACA CCCAAGCTAT GCGTCTTACG CAAAATGCGC AGGATGCGCA AGATTTAGTG
CAAGATACTT TTGAGCGCGC TCTTAAATCT TTTGAAACTT TTCAGCCTGA CACAAATTTT
GCTGCCTGGA TTAACAGAAT TGAACGAAAT TTGTATTTTA ATCAGTACGC GAAAGCAAAA
CGAAGCCCTA AACGTGCTAA CGATGAAACT GGTGACTACA ATGATTGGGA TATTTATGAG
GCTTCTAATC ATTGCGCAAA AGGAATGCTT TCTGCTGAAC AAGAATATTT AGAAGGGTTT
GCTCCACAAG AGATTATTGC GGCGCTTAGT AAGTTGCCAC CTGAGCGTAG AAAAGTTTTT
ATTGAAGTTG CTATTCGAGG TAAATCTTAT AAACAAATTG CGCAAGAAGA AGGCGTAAAA
ATAGGAACTG TTATGAGTAG ACTTAACCGC GCTCGCATGC AACTTAAACG TGAACTTTCT
GATTATTCTA GTGAATAA
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| Protein sequence | MSEQIEKTNV MCSKSVRAKK QSAKNCNARL FSDRLVNTKQ SSAMESRRKR FEQLVSTCVD
SLYTQAMRLT QNAQDAQDLV QDTFERALKS FETFQPDTNF AAWINRIERN LYFNQYAKAK
RSPKRANDET GDYNDWDIYE ASNHCAKGML SAEQEYLEGF APQEIIAALS KLPPERRKVF
IEVAIRGKSY KQIAQEEGVK IGTVMSRLNR ARMQLKRELS DYSSE
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