| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0462 |
|---|
| Symbol | |
|---|
| ID | 8710060 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Gardnerella vaginalis 409-05 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013721 |
|---|
| Strand | - |
|---|
| Start bp | 504699 |
|---|
| End bp | 505601 |
|---|
| Gene Length | 903 bp |
|---|
| Protein Length | 300 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 646482577 |
|---|
| Product | kinase, PfkB family |
|---|
| Protein accession | YP_003373704 |
|---|
| Protein GI | 283782950 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0524] Sugar kinases, ribokinase family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTAAGC CAATTGTTCT TTCACTCGGC GAACTTTTAT GGGATTTGCT TCCACACGGA
AAACGTGTTG GCGGAGCACC AGCAAATTTT GCATATCATG CACAGTGTCA CGGAGCGCAA
AGTTGCATGA TTAGCGCTGT TGGTCAAGAC CAACTCGGCG ATGAGCTGAT TGACAAAGTG
AACAAAGCTG GCATCGCTTC AATTATTCAA CGCAACGCTT GGCCAACAAG CACTGTAGAA
GTAACACTAA AAAATGGAAT ACCAGAGTAC ACTATTCTGC GAAATATAGC ATGGGATCAT
ATTCTTTACA CTCGAGAACT CATTGATTTA GTAGAACGAG CAGATGCAGT ATGCTTTGGC
ACTCTAAGCT TACGTTCTCA AGAAACTCAC GACACAATTT TGCAATTGTT AAAGCATACT
AAGCCTGGAG CAATGAAGTT CTTCGATATT AACATTAGAA GCGATCACTA CTCTAAGGAT
CTTATTGACA CATTACTTCA AGAAGCAACA GTATTTAAGC TTAACGATTC GGAACTATTC
TTATTACGCG ATATGTTCAA TATTCGCGAC ACTTCAGACG AGGAAGCTTG CAAGTGGTTC
CAAGCTCGTT ACGGACTAGA TTATGTGATT CTTACAGGCG GCTCTACTTT TAGCACGATT
ACTACTAGCA CTGGAGAAAG CTCAACTATC CCAACTCCAC ACGTTGAAGT TCTTGACACA
GTTGGTGCTG GAGACTCGTT CTCAGGAACA TTTGCAGCGC ATATTCTTAA GGGAGAAAGC
TTGCAAGAGG CGCATCGCGC AGCTGTTAAT ACTGCAGCAT TTGTGTGCAC TCAAGAAGGA
GCATGGCCTA AGTATCCAAA ACAAATACCA GATTACTTGT CAATGGCAGA AAATAACAAA
TAA
|
|---|
| Protein sequence | MTKPIVLSLG ELLWDLLPHG KRVGGAPANF AYHAQCHGAQ SCMISAVGQD QLGDELIDKV
NKAGIASIIQ RNAWPTSTVE VTLKNGIPEY TILRNIAWDH ILYTRELIDL VERADAVCFG
TLSLRSQETH DTILQLLKHT KPGAMKFFDI NIRSDHYSKD LIDTLLQEAT VFKLNDSELF
LLRDMFNIRD TSDEEACKWF QARYGLDYVI LTGGSTFSTI TTSTGESSTI PTPHVEVLDT
VGAGDSFSGT FAAHILKGES LQEAHRAAVN TAAFVCTQEG AWPKYPKQIP DYLSMAENNK
|
|---|
| |