| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0446 |
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| Symbol | |
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| ID | 8709060 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 489518 |
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| End bp | 491296 |
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| Gene Length | 1779 bp |
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| Protein Length | 592 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 646482561 |
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| Product | putative hydrolase |
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| Protein accession | YP_003373691 |
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| Protein GI | 283782937 |
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| COG category | [S] Function unknown |
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| COG ID | [COG5282] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR03624] putative hydrolase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.00159778 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAATGACG ATGCAATTCA CCAATGGCTC ATTGAATGCT TTGGGCCAAT ACAAGGAGAA
GAAGCATGGA AACAACTTGA TCAGCTTCCG TTTGAGCTAC GCGAACAACT CTTAAATCAG
AATCCAGATA AGCTTCCTAA ACCAGACGAA GTTCGCGGAA TGATGCAAGC TTTTAGTGCA
GGCGGTCTTA ATAATCCGTA CGAAATGGAA GCAACACTTG AAGAAGGGCC AATTAATCGC
AAGTTAGCGC AATCTATTGC TTTACAGCAC GCTAATGGCG ATCAAGGAAA TGTAAATGCA
GACGTAGCAG ATGCCACACG AAGAGCTTTA AGCCAAGCGA ACTTGTGGCT AGATATAACG
TGCAATTTCA ATCCTGCTCC TGGAACGCCA GAAGTATTGT CTAGAGCTGA TTGGGTAGAA
AAAACGCTTG AAGCTTGGGT TAAATTCGCT AATCCTGTTG CAAAATCAGT AAATGAAGCA
CTCACTTCTG TTATTGAAGA GCGATTCCGA GATGTGGATG ATGCTGAAGT AAAAGGATTA
TTTGCAGGAG TTGTGCCGAT TCCGTTGCCT GAAGGAATGA ATAATCCAGC GCAACTCATG
AAACTGCTTG GAAACACTTC GTTTGCTATG CAACTGGGTC AAGCAGCTGG AGCACTTTCA
CACGAAGTAC ACGGCAGTTT TGATCAAGGT CTTGCGCTGT TGCAAAATCC TGCAGGCGGA
TTAATTCCAT ACAACTGCAT TGAGTATGCA AAAGTGTGGG AGTTGGATAT TACAGAAGTC
ATGAATTATT TGGCTTTGCG AGAAGCTGCA CACGCAAGAT TATTTGCATC CGTGCCATGG
CTTATGCCAC GATTTGAAGC ACTGATTATT AAGTACGCAA ACGGAATAAG TATTGATTTA
GAGGCTATGG AAGAACAGCT TCGCGACGTG GAAACAATGA ATCCGGAAGC AATTTCAGGA
GCTGTTAATT TGCAAAATAT TGGCAGCAAT GATTCTGAGG AGCAGCGTCA AGCTTTGCAC
AGTTTGGAAA CTTTGCTTGC ACTTGTTGAA GGTTGGGTTG ATTGCGTTAC ATGGCAGTCT
GGAATGGCTC ATATTGTGCA CATTGAGCAG TTGCGAGAGA TGATGCGTCG CGAGCGAGCT
GCAGGAGGAC CTGCAGAAGT GACGTTTGAA TCGTTACTTG GTTTGCATTT GCGCCCTCGC
CGTATGCGCG AGGCATCGCA ATTGTGGGAA AAATTGACTC GCGAGCGCGG TATTGAAGAG
CGAGATAGCT TGTGGAGTCA TCCAGATTTG TTGCCAACTT TGCCGGAAGC TAGCGAAGTT
ACGAAAGACG CTAGTAATGA AGGTAAAGCT GGTAACGAAA GTAAAGCTGG TGACGCAGGT
AACGCAGGTG ACGAAGTTAC GAAAAAATCC GATGCGGAGG ATGCAACGAA AACTGCTGCA
AAAAATGCAA TAGAAACTCA GTCTAATCAA ACTAATGAAG CAACTGAAAA AACTAGCGAA
AGTCACGAAA GTGCAGACAG TTACGAAAGT AACAAAAATA CTGATAACGC TATCGAAAAT
GCGCCTATCG AAAAATCTTT TGAAAAATTA ACAGAAGACG ATTTAGGCAC AAATGATTGG
GATGCTGAAC TTAGCAAGCT TTTGGAAGAG GATGCACGCC AAAAGAAGCA AAACAGCGAA
ACCGGTAACG AAACTGACGA CGAATCCGGC GACGAATCCG GTAACGAAGC TGGCAACGAA
TCCGGCAATT CCGACGAAAC TGATGCTGAC GGCGAATAA
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| Protein sequence | MNDDAIHQWL IECFGPIQGE EAWKQLDQLP FELREQLLNQ NPDKLPKPDE VRGMMQAFSA
GGLNNPYEME ATLEEGPINR KLAQSIALQH ANGDQGNVNA DVADATRRAL SQANLWLDIT
CNFNPAPGTP EVLSRADWVE KTLEAWVKFA NPVAKSVNEA LTSVIEERFR DVDDAEVKGL
FAGVVPIPLP EGMNNPAQLM KLLGNTSFAM QLGQAAGALS HEVHGSFDQG LALLQNPAGG
LIPYNCIEYA KVWELDITEV MNYLALREAA HARLFASVPW LMPRFEALII KYANGISIDL
EAMEEQLRDV ETMNPEAISG AVNLQNIGSN DSEEQRQALH SLETLLALVE GWVDCVTWQS
GMAHIVHIEQ LREMMRRERA AGGPAEVTFE SLLGLHLRPR RMREASQLWE KLTRERGIEE
RDSLWSHPDL LPTLPEASEV TKDASNEGKA GNESKAGDAG NAGDEVTKKS DAEDATKTAA
KNAIETQSNQ TNEATEKTSE SHESADSYES NKNTDNAIEN APIEKSFEKL TEDDLGTNDW
DAELSKLLEE DARQKKQNSE TGNETDDESG DESGNEAGNE SGNSDETDAD GE
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