| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0439 |
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| Symbol | |
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| ID | 8709685 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 481368 |
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| End bp | 483029 |
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| Gene Length | 1662 bp |
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| Protein Length | 553 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 646482554 |
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| Product | ABC transporter, ATP-binding protein |
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| Protein accession | YP_003373684 |
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| Protein GI | 283782930 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1123] ATPase components of various ABC-type transport systems, contain duplicated ATPase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.0000142336 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACGAATT TGGATGCGCA AGCTTTGAAT AATAAAGATT TGGATGCGCG TAAAAGAATT
GTTATAAGCG TTGAAGATTT GTCGGTTTCG ATTGACGGTA GGCAAATTAC ACGCAATGTT
TCTATGCGAT TGCGTGCTGG AATAGTTTCT GCGTTAGTAG GCGAGTCCGG TTCTGGAAAG
TCACTTACTG CGCTGGCTCT TATGGGATTG CTCGATAATA ATGCGCGTGT TGAAGGGAAT
GCGGCGCTTC TTAACGCTTC GGATACTAAC GAATCTTTTA TAAATTTGCT TAGCGAAGAT
GCCTCTTATG AGCATATTCG CGGTGGCATG ATTGGCATGA TTTTTCAGGA GCCGTCCAGT
GCGTTTAATC CTGTGAAAAC AATTGGCAAG CAAATAGAAG AAGCGCTAAT ATATCATCCT
GAAAAAGCAG GAAAGCTTAG CCAAAGAGAT CGTAAGAAGC GTGTGATTTC GCAGCTTCTC
GAGGTTGAGT TGAGTGATGC TGAGCGCGTG TATCGTTCTT ATCCGCATGA GCTTTCTGGC
GGCCAACTCC AGCGTGCGAT GATTGCTATG GCTTTAATAA ATCGTCCACA AGTTTTGATT
GCAGACGAGC CTACAACAGC ACTCGACATC ACCACGCAAC GAGATATTTT ACGTCTTATA
CGTAATTTGT CGGAGAAATT ACAGCTTGCT GTATTAATTA TTACGCACGA TATGAGTGTT
GTGCGCGCGC TCGCAGATGA AATGTATGTA ATGCAAGGCG GGAATATTGT GGAATTTGGC
GAAGTTCAGC ATATTTTTGC GAATCCTAAG CACGAATATA CGCGCACTTT GCTAGATTCT
GTTCCTAAAT TTGATATGCA ATATGCTTCA AGTGGTGATT CTTATGAAAG TATAGAAGAA
GTAGCAAAAG CAATTGCTAA GAATATTGCT AAGAATATTT CTGAATCTCC AGGATCTGAA
TCTCCAGTAG TTGAAGTTCA AGGCGTAAGT GTGAAGTATT CGCATGCTCG TTTTAGCAAA
AATTCAAATA AGCTTGCTCT CGCTAATGCA AACTTGCGCA TTAACTCTGG CTCTACACTA
GCTTTAGTCG GGGAGTCTGG AGCTGGGAAA ACCACTATTG CAAAGCTTAT TTCTGGGCAA
ATCAAACCAA ATTCAGGATT AGTGCTACTT AATGGAGAAA ACTTAAACAG ATTAAACAAT
AAAGCTCGCC GCCAAGCATT ATCGCGAATT GGATACGTTT TTCAAGATTC AGGTTCCGCA
CTAAATCCGC GTAAAACCAT TGGCTGGAGT ATTGCAGAAC CATTACTTTT ACACACGAAT
CTTGATGCCA ATGAGCGTTT AGAGCGCGTT GAAGAAATGC TTAATCAAGT ACAACTGCCA
GTTGAATTCG CAAGCCGTTT TCCTCACGAG CTTTCCGGAG GTCAAAGACA GCGCGTAGGT
ATTGCGCGAG CGTTGATTTT GCAGCCTTCT CTGCTTATTG TGGATGAGCC AACTTCTGCG
CTTGACGTAA CAGTGCAACG TTGTGTACTT AACTTATTGC ATGATTTGCA ACAAAAATAC
CGTTACGCAT GCTTGTTTAT TACTCATGAT GTTGGCGTTG TGCAAGAAGT TGCTAGCGAA
GTTGCCATAA TTAGAAATGG CAGCGTTCAA TATATTTCGT AG
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| Protein sequence | MTNLDAQALN NKDLDARKRI VISVEDLSVS IDGRQITRNV SMRLRAGIVS ALVGESGSGK
SLTALALMGL LDNNARVEGN AALLNASDTN ESFINLLSED ASYEHIRGGM IGMIFQEPSS
AFNPVKTIGK QIEEALIYHP EKAGKLSQRD RKKRVISQLL EVELSDAERV YRSYPHELSG
GQLQRAMIAM ALINRPQVLI ADEPTTALDI TTQRDILRLI RNLSEKLQLA VLIITHDMSV
VRALADEMYV MQGGNIVEFG EVQHIFANPK HEYTRTLLDS VPKFDMQYAS SGDSYESIEE
VAKAIAKNIA KNISESPGSE SPVVEVQGVS VKYSHARFSK NSNKLALANA NLRINSGSTL
ALVGESGAGK TTIAKLISGQ IKPNSGLVLL NGENLNRLNN KARRQALSRI GYVFQDSGSA
LNPRKTIGWS IAEPLLLHTN LDANERLERV EEMLNQVQLP VEFASRFPHE LSGGQRQRVG
IARALILQPS LLIVDEPTSA LDVTVQRCVL NLLHDLQQKY RYACLFITHD VGVVQEVASE
VAIIRNGSVQ YIS
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