| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0423 |
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| Symbol | |
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| ID | 8709948 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 456120 |
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| End bp | 462248 |
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| Gene Length | 6129 bp |
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| Protein Length | 2042 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 646482538 |
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| Product | PA domain protein |
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| Protein accession | YP_003373670 |
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| Protein GI | 283782916 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1404] Subtilisin-like serine proteases |
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| TIGRFAM ID | [TIGR01167] LPXTG-motif cell wall anchor domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.0201874 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGTTCA AACGAACGTC ATATCTGACT CGTTTAGCAG CATTAGGCGT GGCTGCGGCG
ACGCTTATGG TACCGCTTGG GCAAGTTCCT GCGGCATTTG CAAAAAATGA TAATGAAACT
AAAAAAGATG GCAATGCACT TGTCTCTAAG ATGCTTGATT CATCTTTAAA AGCTAATAGT
GAGATTAAGT CTATAGAAGA TTTACGCCAT GTTAATCCAA CTCTTGCTAA AGCTTTTGAG
AATTACAGTA AAAAAGATCA ATTTAATAAA AATTCAAATG CTCAAGTAAC TGTTGTTGTT
ACGTTGAAAA ATTATCGTTC GCAACTCACG GATGCTGACG AAAAAGCCAA CATTCATGAG
CAGAATGTTT TAATTAACCG CGTAAAGTCA AAGTACAATA TGACGGTTCG TCGCCAGGTT
GGTTATTTAA TGAGTGCTTT TGAAGCTACT CTCCCTGAAA AACACGTTCA AGATTTGAAA
CGTGAGCCAG GTGTAGTTTC TGTCGCAAAA GAACGTTTAT ATCATCCAAT GGAAAATTAT
GCTCGCGATT TACAAGGCGT GCAGACGGTG TTTAAAAAGC ATCACCTCGA TGGAACCGGA
ATGCTTGTTT CTATTATCGA TACGGGCATC GATCCAAATC ATCAAGATAT GAAGCTTGAC
GCTTCAGCAA AAAAGAATAT TCGCTTGAAG CCAACTGGTA AAGGAAATAC AACAGATAAA
GTTCCTGCAG GTTTCAATTA CGCTGATGAA AATACTAATT TCACAGACGC TAATGGTGAA
CAGCACGGTA TGCACGTTGC CGGTATTGTG GCTGCTAACG GCGATGAAAA TGGTGCTCCA
GCATCTGAAA ATCATCGTGT TGATGGCATA GCTCCAAACG CTCAGCTGCT CGCTATGAAA
GTCTTCTCAA ATGTGCCAGG TTCGCATGGT GCTCGTGATG TTGATATTGT TGCTGCAATC
GAAGATTCTG TAAAGCTTGG CGCAGACGTT ATTAACATGT CTCTTGGCTC AGATAACGGT
TTCGGTGGAA CGTCAAGTGC TACTAGTGTC GCGTTAAAGA AGGCTCGCGA AGCTGGTGTG
CTTCCAGTTA TTTCTGCAGG AAACTCCGGC TTGAACTTCT CTGAAAGCGG TGGCATAGAT
GATAGTTTAG GCAAGTGGGA TGATGCAACT CTCGGCTCGC CATCTTCTTA TCCTTCTGCT
TTCAGCGTTG CTTCTGTAGA AAATTCCAAC ATTACTCAGC AGTCTGCAAA TTGGGTTGGA
AAAGATGGCA AGTCACATAC TTTGCCGTAC AGCTATTCTA TTGGTTCTTT AACAGATGCA
CTATCTCAGC ATGAACTTGT GGATGCTAAA AAAGCTACTA AAGCTGATGT TAAAGATCTT
GATCTTACCG GTAAATATGC TCTTGTAGAA CGTGGTGGAA TCAGTTTTAC TGAAAAGTTT
AATAATGCGA TTTCTAAAGG TGCTAAAGGT GTGATTGTTT ACAATCACGA CAAAGATTCA
TCCTTATTCA TAGGAATGGG CGGATTGGAG AAAATCAAAA ATTGCTTTGG TGCATCTATT
CCTCGTTCTT ATGCATTGGA AATTAAAGCA GCATTAGATA AAGGTGAGAA AGTAAAGATA
GCTTTCACTG AACAATTCGT TACTATCGCC AATCCGGATG ATGGGAAGCC TTCTAGCTTT
ACTTCTTGGG GTCCAACTCC AGAATTTGAT TTTAAACCTC AGATTGCTGG TATCGGTGGT
AATGTTTGGT CCACGCAGAA TGGAAATAAG TACACCAGCA TGTCTGGTAC TTCCATGGCT
GCTCCAAACG TTTCCGGTCT TTCAGCGTTG GTGATGGAAA GCTATAAGAA TCGTTTCCCT
GAGCTTAACA AGTCTGAAAT GGCTACCCGT GTAAGCCAAG CATTAATGAA TACAGCAAGT
ATTATTGGAC ATAAAGATTC TGCAGATAGT AAGAAAATTC CTTATGCTCC TCGTCAAATC
GGTGCTGGCT TAGCTCAGGT AGATAAAGCT GTTGCTACTG ACGTGATTGC AACAGTAAAC
GGCAATTCGT ATGTGGCTCT TAAAAACGTG AATTCTAATC GCGAGTTTAC GGTTACTTTA
CATAATTATG GTAAGAAGCC AGTAAAATTT GCTGTCCCAG ATCAGGAAGT TGTAAATGAG
TCTAATGAGG TTAATAAAGA TACAGTAACA TCTATTAGTA ATACTGAAAC GTTGCAATCA
GAAACGCGTA ATGTTACAGT AAAGCCTGGA AAAACCGCTG ATGTTAAGTT TACGTTAAGC
CCAAATCGTT CTAAAGGCAA TCATTATATT GAAGGTTGGG TGCGATTTGA ATCGCTTACT
GATACTCAGC CAGATGTTTC TGTGCCATAT CTTGGCTTTG TTGGCGATTG GAACGATGAA
CCTATAATGG TAAAACCGGG AGAAAGCTAT AGTGCAAAAC ATAGTGATCT TACGACATCG
TTGCTTTCGG TAGCTGGTTT TATGGGTAAA CTTCCGGTTA ATAATGAAAC TAAACCTTAT
GTACTTGGCG AATTTTCACC TGCAAATCAA GATGGCTGGA TGGATTATGT TGTTCCATCT
ATGGCTATAT TCCGCGGTGC ATCTGACATA AAGTATTCTG TATTGGATTC TCATAATAAA
ACTAAGATTG TTCTTGGAAC GGAACACAAT GTGCATCGTT CTACTATTGC TAATGCTGGA
ACAACAGATG GTTTAGCTGG AAATTTCGAC GGGTCTGTGT GGAATCCAAA AACAAGTAGG
TTTGACATTC TTCCTGATGG ATGGTACACG TATCGTATTC AAGCTCGCTT AGGAGATAAG
TTTGATTGGC AAACTTATGA TATGAAGGTA GCAATCGATA ATCATGGACC TAAGGTCACA
GTATCTGATC GTGATGATAA AGGCAATGTG AAGATTGTTA TTAGTGATGA ATTGAGTCCT
GATCCTGGCG TGCCAACTAT TCATCTTCCT GGTGTAAAGG ATGCTTTGAA CTATGGTGAT
GAAGACACTC AATGCCCGTT GAATGAAGCA ACTCGTACGC GAGTGTGCAA GTCTATTCAC
ATTGGTAATG AAGCTCAATA CATAGATGTG CTTGTTCGAG ACAATGCTAT GAATCCAACT
GAGGTTAAGA AGGTATTCGA CACATATGTC CCGAATGGTT CAGGAAAAGC TGAGAAGAAC
AAGAAGTTTA TTATTCCAAA TGAACAAAAA CTTATTTCTC ACCAAATTAA AGCAAATCAG
TTAGAAGAAA GTAAGACTAA CCCAGATATT AATGGTAAGT TCTATCTTGA GGGATATCTC
ACTAAAGATG TTGCTTCTAT AAAAGCTTAT GTGACTCCTA AAGACGGTAA AAAGCAGGAA
GTCAAATTAG CTAAAAAGCG CAAGGGCGAG AATACTTTCT ATGCGTTTGT GCCACTGAAA
AATGGCAAAA ATACTGTAAT GCTTAAAGCT TTTAATAGTA ATGGTGGCCG TATTGGCAAT
AAGAAACTTG AGTTAACGTT CAATGCGCAA ACACCTAAGA TTACTGTTAA TGGCTTAGAT
GATAAGGGTA ATTTGCCTGT AGGTGCAGAT GGTAAAGTAA CTGTTGCTGG TAAAGTAACT
GATACTCCTG GAGATACTGT AAAGCTAAAG CTTACTTATC AAAAGGCTGC TGACAACACT
ACTCCAGCTA ATGCAGTTGC TGGTTCTGTA AACAATCATG CTTCTGGTTC TGCTTCTGGA
TCTACTATTA AAGCTGTTTC TGGTGCTAAT ACAACTTCAG CAACGAGTAT TGATGCAAAT
GTAAAGAAAG CAGATACAGC TGCAGCTAGT AAAGAAACTG AAGAAGTAGT AACTGTTGGC
AAAGACGGTA GCTTCAAAAC AGTTATTACT CCTGCCGCTA AAGCTGTTAT GGTAACTCTT
GTAGCTACTG ATTCTGCTGA AAACACTACA ACTATAGGTT TGGCTCTCGC TGGTCGTTCA
ACTCCTACAC CTAAACCTGC AGCTGCAACA AAAGATTTCG TGCTTACTAA TGCTGGCTCT
ATGGGTGCTT ATGCGTGGTT AATTCATAAG AAGAATTATG GTCCAGACGT TATTGGCTCT
GATTACTTTG TTGCTCAAGG TGATGTGAGT TCCAAGGTGA CTAGCGTGGT GTTTACTCCA
GCTTCGCGTT TTGATGCTAC AACTAAGAAT CTTGTAACTC CAAACCCATT GCGTGCTGAA
ATTAAGAACG GAAAGTTTAG TGTAAAGCTT CCAATGCATC CGGGTATAAA TGATTTCCGC
TTGCAGGTGA ATACTAAAGC AGATGACGAA GATGCTGATG AAGATGATGA AACGAATGTA
ATCGATACTC CTGCAGCATT CTACTTCGAC ATTACGCCTC CAACGGCGCA TTTCGATACT
CCAAAGCTTT ATGGTCACAC GTTGTTCACC AATCGTGACA CCGTGACTTT CAGTGGAAAT
GTATCGGATG ATGCTTTCGG TCAAAGTTTG CGAATTAACA ACGATTCCGT TGGTGATTTC
TACACTTTGG ATACAAATGG TAAAGAAACA ACTCGTCGCC AATTCTCAAC TGACATTCCA
GTAGACAATG GTGATAAGTT GCTGCTGCAC TTAAGTGATC AGGTTGAATC TCATTTACTT
AGTGTGATTC CAGTTGTTCT TGACGAAACG GATCCTACTG TTGAAGCAGG TTTGGTTGAA
GGTGAAGAAA TCGATGATGG TCACGAAATT ACTGTTAAAG CAACAGATGA TAATTTGAAG
TCTTTGCGCG TTATGGTTGA TGGTCGTCCA GTAGCGTATA CAGAAAATTA TCTTCCAACT
ACAGCAGTAG AGAACACATT AGTGGATGTT TCTAAGGTTA ACGATAATCC AACTCCAGAT
AAGCCAGGTT CTACAACATT AACGTTGAAG ATTCCTACTA AGAAGTTGAC TGATGGTTCT
CACACTATCA CCATTGAGGC GACCGATTTT GCCGGTAATA CAGCAAGCGC CACAAGTGAT
AATGCAAAGG GAGCTACTGC ATATACATTC AAAGTGAAGC ATGGTGTGAA GCCTGGTGAG
GATCCGTCTA AGCCTGGTCA AGATCCAAAG AAACCTGGTG AGGATCCGAA GAAGCCTGGC
GAGGATCCGG CTAAGCCAAA GAATCCAGGA ACCAAGGATG AATCAACTCA AACTGATTCT
GCCCCAATTC CTCCTGCTTC TACAGAAAAG ATCTCAAAGA CTATTGCTGG CTTAGACACC
AAGAATGTTA CAGCTGGAAA GGAAGTAAAG ATTTATATTT CTGGAAAGCC TGCAGCTTTG
AAGAATGCTA AAGCCAATGC TCGCATGTAT GCGTTCATTT ACTCTGATCC TAAGGATCTT
AAGGGTGAAG ATGGTCATGA ATATGTGACA GTGCGTACTG GTGAGAACGG TAAGTACTAT
TTCAAGGTTT TGATTCCTAG CGGATATTCA GGTAAGCACA CAATCTTACT TATGGATGCA
AATGGTAACC AGATTGCTTC TGGAGAGGTG TCTGTATCTT CCTCTGCTTC TTCTGATAGT
GGCAGCCAAA CTGATTCTGA TACTAAGAAT AATCAGAATA ATCAGAACCA GAGTGGTAGC
GGTAATACTG GTAACGCTGG TAATACTGGT AATACTGGTA ATAGCGAAGG TGGAAGCTCA
GGTCACGGTA AGGATAGTGG CAACAACGGT GGCAGCACTA GCGGTAATGC AAGCGGTGAT
ACCAACAATG ATAGCCGCGG TGGTAATCAT GGCGGTAGCC ACAGCTCTAA TCATGGCGGT
AGCCACAGCT CTAACCACGG CGGTAATCAT GGTGGAAAAT CCTTTACTAC TGGAGGTAAT
TCCAGTAATA ATTCGGAGTC GTCCTCAAAG GATGATGCGG ATTCTACTAA TGCAGGCGCA
TCCGCTGCAT CCGGCGATGC CGCTGCCAAT GGCAACGCAA GTTCTTCCAA TGGCAACGCA
AGTGCTGCGA ATGGCAACGC TGCTGCAAAG CAGAAGGCTG CCGCTAAGGC TGCCGCCAAG
AAGATGACTT CTGATTTGGC GATGACTGGT AGCAGTGTGA TTGGCATGGT TGTGACGTTT
ATGGTGTTGC TTGCAAGCGG TGCTGTAACG TTTAAAACTC GCCGCCGTCA TGTGCACGCA
AACAAGTAA
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| Protein sequence | MKFKRTSYLT RLAALGVAAA TLMVPLGQVP AAFAKNDNET KKDGNALVSK MLDSSLKANS
EIKSIEDLRH VNPTLAKAFE NYSKKDQFNK NSNAQVTVVV TLKNYRSQLT DADEKANIHE
QNVLINRVKS KYNMTVRRQV GYLMSAFEAT LPEKHVQDLK REPGVVSVAK ERLYHPMENY
ARDLQGVQTV FKKHHLDGTG MLVSIIDTGI DPNHQDMKLD ASAKKNIRLK PTGKGNTTDK
VPAGFNYADE NTNFTDANGE QHGMHVAGIV AANGDENGAP ASENHRVDGI APNAQLLAMK
VFSNVPGSHG ARDVDIVAAI EDSVKLGADV INMSLGSDNG FGGTSSATSV ALKKAREAGV
LPVISAGNSG LNFSESGGID DSLGKWDDAT LGSPSSYPSA FSVASVENSN ITQQSANWVG
KDGKSHTLPY SYSIGSLTDA LSQHELVDAK KATKADVKDL DLTGKYALVE RGGISFTEKF
NNAISKGAKG VIVYNHDKDS SLFIGMGGLE KIKNCFGASI PRSYALEIKA ALDKGEKVKI
AFTEQFVTIA NPDDGKPSSF TSWGPTPEFD FKPQIAGIGG NVWSTQNGNK YTSMSGTSMA
APNVSGLSAL VMESYKNRFP ELNKSEMATR VSQALMNTAS IIGHKDSADS KKIPYAPRQI
GAGLAQVDKA VATDVIATVN GNSYVALKNV NSNREFTVTL HNYGKKPVKF AVPDQEVVNE
SNEVNKDTVT SISNTETLQS ETRNVTVKPG KTADVKFTLS PNRSKGNHYI EGWVRFESLT
DTQPDVSVPY LGFVGDWNDE PIMVKPGESY SAKHSDLTTS LLSVAGFMGK LPVNNETKPY
VLGEFSPANQ DGWMDYVVPS MAIFRGASDI KYSVLDSHNK TKIVLGTEHN VHRSTIANAG
TTDGLAGNFD GSVWNPKTSR FDILPDGWYT YRIQARLGDK FDWQTYDMKV AIDNHGPKVT
VSDRDDKGNV KIVISDELSP DPGVPTIHLP GVKDALNYGD EDTQCPLNEA TRTRVCKSIH
IGNEAQYIDV LVRDNAMNPT EVKKVFDTYV PNGSGKAEKN KKFIIPNEQK LISHQIKANQ
LEESKTNPDI NGKFYLEGYL TKDVASIKAY VTPKDGKKQE VKLAKKRKGE NTFYAFVPLK
NGKNTVMLKA FNSNGGRIGN KKLELTFNAQ TPKITVNGLD DKGNLPVGAD GKVTVAGKVT
DTPGDTVKLK LTYQKAADNT TPANAVAGSV NNHASGSASG STIKAVSGAN TTSATSIDAN
VKKADTAAAS KETEEVVTVG KDGSFKTVIT PAAKAVMVTL VATDSAENTT TIGLALAGRS
TPTPKPAAAT KDFVLTNAGS MGAYAWLIHK KNYGPDVIGS DYFVAQGDVS SKVTSVVFTP
ASRFDATTKN LVTPNPLRAE IKNGKFSVKL PMHPGINDFR LQVNTKADDE DADEDDETNV
IDTPAAFYFD ITPPTAHFDT PKLYGHTLFT NRDTVTFSGN VSDDAFGQSL RINNDSVGDF
YTLDTNGKET TRRQFSTDIP VDNGDKLLLH LSDQVESHLL SVIPVVLDET DPTVEAGLVE
GEEIDDGHEI TVKATDDNLK SLRVMVDGRP VAYTENYLPT TAVENTLVDV SKVNDNPTPD
KPGSTTLTLK IPTKKLTDGS HTITIEATDF AGNTASATSD NAKGATAYTF KVKHGVKPGE
DPSKPGQDPK KPGEDPKKPG EDPAKPKNPG TKDESTQTDS APIPPASTEK ISKTIAGLDT
KNVTAGKEVK IYISGKPAAL KNAKANARMY AFIYSDPKDL KGEDGHEYVT VRTGENGKYY
FKVLIPSGYS GKHTILLMDA NGNQIASGEV SVSSSASSDS GSQTDSDTKN NQNNQNQSGS
GNTGNAGNTG NTGNSEGGSS GHGKDSGNNG GSTSGNASGD TNNDSRGGNH GGSHSSNHGG
SHSSNHGGNH GGKSFTTGGN SSNNSESSSK DDADSTNAGA SAASGDAAAN GNASSSNGNA
SAANGNAAAK QKAAAKAAAK KMTSDLAMTG SSVIGMVVTF MVLLASGAVT FKTRRRHVHA
NK
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