| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0420 |
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| Symbol | |
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| ID | 8709656 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 452203 |
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| End bp | 453861 |
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| Gene Length | 1659 bp |
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| Protein Length | 552 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 646482535 |
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| Product | LPXTG-motif cell wall anchor domain protein |
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| Protein accession | YP_003373667 |
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| Protein GI | 283782913 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR01167] LPXTG-motif cell wall anchor domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.253735 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAATAAAT TCACTAAACA ATGCGTGGCA GCATTCGCCT CGCTCGCAAT GGCTGGCACG
CTGTGCGTCG CCGGCGCCGT GGTGGCAAAC AACGTGGCAT TTGCTACGGG TGCTACAGCA
GCTGAAAAAG CTCCATGGGA TCTTGGTAAT GAAGCTACCA CCAAGAAGGG TTCCATTACC
ATTCACAAAC AAGATGATAC TACTAAGGCA GGTGTTCCTG GCGCTGTATT TTCTGCTAAG
AAAGTTAAGA CAATTGATGG TACTGCCATT AATTTAACTA GTCGAGATGA CTGGGAGACC
TTAGCACAAA AAGTAGATAA ACTTAACAAG AGTGCTACTG TTGCTGATAA CACTATTGCA
TATGAAACTC CATTGCCAGA TCAAACAACT AATTCTAATG GTGAGGCAAA GTTTGCTGAT
CTTTCCATTG GTATCTATCG TATTGAAGAA AAGAATCCGC CTAAGGGTTA CACATCTGAT
GTTATTCCAT TCTTCATGAC AGTTCCAGAG ATTACTCGTG ATAAGAGCTC TACTAACAAC
AAGTACACTT ACGATGTAAG CGTAACTCCT AAGAACCACA ACGTGAAGGA CGCTATTTCT
AAGACGGCTG ATACCAAGAA CATGGTTGGT GTTGGTGATG TTTTGCCATA TACAATTAAC
GCTACACCAA ACAAGACTAA GGCAACCAAC CTTGATAGAG ACGGTAATGC TAAGAATCTT
ACTAAAGAAG ATCTTAGCCA GTATGCAATC TTTGATGATG CGTTAACTAC AGCATATGAG
AATGCTAATG AAAATGCAGT TGCTGAAGTT AAACTTGACG GTGAGACTGA TGCGTTAATA
AAAGGCACTG ATTATGAAGT AACGAAAGCT GCAACTCCTG ATGATAATAC TCGAACTCGT
ATTTCTGTCG TGTTTAAGGA TGCTGGTCTT GAGAAGATTA TCACAAAGTT GAATGCGGTT
ACTAATGCTC AGCAGCAGCC ACAGATTCAT GTGACTTTTA ACTTCAAGAT TGCCTCTACA
GTAACTACGG GTAGTGATCA TAAGCTTTCT AACAAGTATG GCTTCATCCC AGGTGGAAAA
ACTGGTGAAA ACCATGAGCC AGTTGTGCCT GATACAACTA CAGATACTGA GTTCCGTAAG
TTCCACATTC TTAAGTATGA TGCTAAAAAA GGTGAAACAA CCAAGCTTGA TGCTGCAAAG
TTCAAGGTGT TTGCTGGCGC TAACGGTGAT TCTACTACTG ATTCCAATGC TCTGAAAGTA
GCACAGAAGT GTGCTGATGA TCCTACTAAT GCAGATAATT GCAAGACTTC TCTTAGCGGT
TTTGGTGAGA AATCTACTAA GAATGGTGTA ACGGAAGATT ACTCTGCTAA GGTTGGTCAG
AAGTTCTACA TTGTTGAGAC TTCTGCTCCT GAGAACTTTA CTCGCTCTAC CAAGGTTTAT
GAAGTAACTT TGACTTCTGC TCCTTCGAAG GATGGGGCTC AAGTTGTTAA GATTGCTAAC
GTTCCTACTA AGGATGGAGA TCACAACTGG TTCAACCTTC CAAAGACCGG TGCTGCAGGC
GTAATCATCT TCGCGTTGGC TGGCATGTGC TTGGTTGCTG TTGGCATGTT CATCTTCTTG
CGCAACCGCA AGAAGGATGA AGAGCAGCAG GCTGCCTGA
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| Protein sequence | MNKFTKQCVA AFASLAMAGT LCVAGAVVAN NVAFATGATA AEKAPWDLGN EATTKKGSIT
IHKQDDTTKA GVPGAVFSAK KVKTIDGTAI NLTSRDDWET LAQKVDKLNK SATVADNTIA
YETPLPDQTT NSNGEAKFAD LSIGIYRIEE KNPPKGYTSD VIPFFMTVPE ITRDKSSTNN
KYTYDVSVTP KNHNVKDAIS KTADTKNMVG VGDVLPYTIN ATPNKTKATN LDRDGNAKNL
TKEDLSQYAI FDDALTTAYE NANENAVAEV KLDGETDALI KGTDYEVTKA ATPDDNTRTR
ISVVFKDAGL EKIITKLNAV TNAQQQPQIH VTFNFKIAST VTTGSDHKLS NKYGFIPGGK
TGENHEPVVP DTTTDTEFRK FHILKYDAKK GETTKLDAAK FKVFAGANGD STTDSNALKV
AQKCADDPTN ADNCKTSLSG FGEKSTKNGV TEDYSAKVGQ KFYIVETSAP ENFTRSTKVY
EVTLTSAPSK DGAQVVKIAN VPTKDGDHNW FNLPKTGAAG VIIFALAGMC LVAVGMFIFL
RNRKKDEEQQ AA
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