| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0418 |
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| Symbol | |
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| ID | 8709648 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 445896 |
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| End bp | 451943 |
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| Gene Length | 6048 bp |
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| Protein Length | 2015 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 646482533 |
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| Product | hypothetical protein |
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| Protein accession | YP_003373665 |
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| Protein GI | 283782911 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.768246 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTACCAG CAAAGTTCCG TGGATTCGCA TCACGCGTGG GTCGTCTTGC GTCGCGCGCT
TTGGTCTGGC GTAAGACCAG TGCTGATGGC GCTGTTCGTA CTTCCAGCAC CGCAGTTATT
TCTTCCAGCA ATGCCAATAC TTTTGGCACC GCCAACACTT CTTTCGACAA TGCAGTCACT
TCCAGCAGCG CAGCTACTTC CGGCAGCGTC ACCATCGCTC GCGCAGCATG CCCAGCACAC
ACTCTTCGTC GCGCGCTCTT CGCAATGTTC GTAGCCGCCG CCACCATAGT AACCATGCTC
ATAGTGCCGC CGGTAAAAGA AGCAAATGCA GCTAATGTTA GTTGGGATTA CATTGGTAAT
GGATATATTT CTCCTAACTC TGTTGCGAGT TGGGATGTAT ATAGGGATTT CGATGTTCAG
CCTCCAGATA TAAATACAAT AACCGTTAAT GGAAAGAAAA AAACAACCAT CACTTGGAAT
GTTCTTTTTA ACGCAAATGG ATGCAGAATT AAAAAAATAG AAAACCCAAA TGTAGATTGT
GATGAAAATA CTGCTCTACA TGCGTATGAT GGTAGACCTG ATTTTTATCT TATTCTTCCA
AAAAACATCA AGGATAATAG CATAAGAATT ACAAGGTATC GTACAAAATT TGTTGGCTAC
AGTGGTAGAA ACAAAAAGTT TGTTTGGGAA GAACGAGGCA AAGATCAAAT ACCAAGCGAT
TTTAATGGTT ATACTAATGC TACGCGCTTA CCAGGTGATA GTGATTATGA GAATTTCTGG
AAAGCATCTA TTGAAAAATG TGGTTTAGGT ACAGATGCAA CATGTGAAGT AGATACATGG
CGTCGAGCTG GTAATTTTGG TAGGTTATTT AAATCTTGGG AACAAGATAA CGCTGTAGAT
TCTATTCGCT GGATTGTTAC TGCAGAAGTT GAAGAAGGCA GTGACCCTTA TAAGTTACCT
TTTATGGCAG GTTGGATTTC CTACTATGGA GATAAGCATA AGTTTACAGT TTTTGGTCCG
TATGATCATG ATGGCGACGG CATACCAGAC TTGGAAGAGT TTAAGTATGG TTTAAATCCT
AAAAATGATG ATGACATCCG ATTCCCAAAG AGGTCTAAAG AGGACGCTGT TTACGGTGAA
GTTACTTCCG TGAAACCGTA TATAAATACT GGTGAGTGGG TTGGTGATTC TTATAACGGC
GATTTTAAAT ATTATAAGGA CATGCCAAAT CATGGGGGCA GAACTACGTC TGAGATGATT
CCAACTGATG CTGGAATAGA ATTTACGTTT AAAAAGAATG AAATTGGAAA TAGTGAGATA
CTTCCGCCCG GTGTTACTAA GACGTATAAT CCTAATAATA TGCAGCCTGG TCAAGCCTAT
ATTAATCCAA GAACAGGCGA GGTTAAGTAT AGTCCTAAGG CTTCTGATAG AAACAAAACT
ATACATTTTG ATGTTCAAAT AAACTATCCT GATCCTAAAC CTAACAATTG TAAAATGAAC
AATTCAATTG TGAAGGTCAA AGGCGTTGAT ATACACGTTG TTTCGCAGGC GTCCCGGTAT
AACCCTTACT ATGACGATAC TACAGTAAAA GCTGGTGAAG AAAAGAATTC TCCAAATCCA
AAAGACAGGG GAGGGAAGAA ATTCCCATCT GGCACTAAGT TTAAGTCAGA AATTTATAAT
AAGTATCAAA ATCCACCAAC TTGGGCAAAG ATTAATAACG AGTCCACTGG TGTTGTCACT
TTCCACCCAA ATAAGTGGGT TCCTGCTTCT AAAACTGGTC AGCCTGAGAA GAGACCTGTA
GTTGTGCATT ATCCTGATGG TTCAACTTCG AAGGATAAAG ATTCTGGTAA TCATGGTGAT
CCAGTTAATG CTCCAGTGTA TGTAACAAGA GATAACCCTG GCACTGGTGA CTTGCAGCTC
CATATTCATA AGAACCAAAA TGGTCAAGAG ATTGACTACA ACGATGGATT CGTATTCCGC
AAGAATCGTG AAGTTAAGCC ACAACCATGG ATAGATTCTT GGTCAGTGCA GGAACCTGGC
GATATTACTA TTCGCTCTGT GTGTGCTGAT ACTACAAATC CTCTGAATCT TAAGTTTTAT
CTTAACGGTA TTAATGGAAT AACAATAAAT GGTGAAAAAC CGTGGCCTCA TGCTACTGAT
GAGGAACAAG AAAAGTGCCG AAATGGTCAG GGCTGTGCAG CAAACAAATT ATTTGATAGC
ACAGGCAGAA CCATGGAGCG TACGCGTGGT AGCATCACAG GAAAGCCACT AAAGGTTGGC
AATTACCAGT GCACTGTGTA TGCTTTGAAG CCTAAAGCTT TGAAGAAATT TGAGGATGCT
GCTAAAAAGA ACAAAGATAT TGAAAAGCAA ACCGGTTCTC CTACCAATAT CATTAATCCG
GATACCTTCA AGGGTTTAAG AGAAGATATT GATTATACAT CTAGGACTGT GCCAATTAAG
GTTCACTCCG ACGCGCATTA TTATAACCCT CAATACGATA AGGTATATGT GCAGGCTGGT
GGTAAGTCTA AAGAATCGGC TGCTCCAGTA AGCCATTCTG GTGCTAACGG CGTGAAAGGT
AATGACAAGA GTCAACAGGA GCTTGTGCAG AATGGTACTA GGTTGCCAAA AGGCACTTGG
TTTGAGCTAA GAACCTATCC TAAAGATAAT GAACATGTTC TTACATGGTA TAAATTTGTC
AATAAGCAAA GTAACAAGAA ATCAGGCAAG GATGAGCCTG AAGATAGTAC TACTGACGCT
AGATATGGCA AAGTTACTTT TTCTCCAGAA AAAACTGTAA TGCTTGGTGA ATATTTTGCT
CCTGTAATTG TGCATTATCC AGATGGTTCC ACTTCTGAAG ATCCGGATTC TGGTAATCTT
GGCAAGCCTG TATATGCGCC TGTAGAGGTA ACTAGTCAAC CGATCCAAAA AAATGATTTA
AAGCTCAATG TTTATTCGCA ATATGGCAGA AGACGAATTG AAAACAATGA TAAAAATGGT
ATGCGTTTCC GTAAAGATGA AGTGTTAGGC GACGCTACTG GTAACACTAA GCCAATGTTC
TTTGACTCAT GGTCAAGTGC TAAGCAAGGA AAAATTTATC AGCGCATGCT TTGCTATAAA
AAGAATCCAC AAACTGGTAA ACCTGAAAGC TATGAGATTG ATGGTATTAA TGGTCTGACA
CTTGCCGGTC GAAAAGGTAA TACTACAAGC GGTGAATTTA TTGATAAACA ACCATCACAA
TGGACAAGAG CTACTGAAAA GAATAAGTAT GAATGTACGG TTCATGGTAA AAACTGCAAC
CGTAACCTTT ACTTATACGG TGATGAGCAT GATACCGTAG AGCGCACTTG GGGTTGGTTA
CATGGCAAGG TTAAGGAAAA TGGCGACTTT GTGTGCACTG TGTACGCTAT TAAAGACCTT
GAAAATAAAG ATGGTAAGCA TGGTGATTTA CAAAATAAGT TTGATAAAGC TGTAAATGAC
TTTGTAAAGA AACCTGCTGA TCGCAAGTTT GAAGAGGTTA TTAAATCAGT CTTAACAGAT
AAGCCGGGTA GTGAAGATAG TCCTCAAGAA GCCACTCAAA GGCATATCGA TTGGGATTCG
GTAACCTTCC CAATTCATGT GCATAGTGAT GCTCACTACT ACAACCCAGA GTATAAGACT
ATTAGCATGG AGGCTGGTAC CAAACAAGCC ACTGAGGTGC CTAAGAGCAA GAAGAATGCC
AACGATGCTA ATACGTTGCA AGACGATGTG CGCGAAGGTG ATCTACCGGA CGGAACTTGG
TTTAAGTTTA AGAAATCTTT AAGCTACACA TTCTTTGAGG ATGATCAAGA TAATAAAGCT
GACTCTGGTG ATTCAGCTAA GAATGGCACG GGTCAGTTTG GCAAGGTGAC GTTCCGACCG
CACAAGTGGT TCCCTGTTGG TTCTGACAAA GTGCAGGTTA TTGTGCACTA TCCGGACGGT
TCCACTTCTG AAGATAAGGA CTCTGGTAAT CTTGGTAAAC CTATTTATGC GAAGGTAGAC
ATTACGCGAT CGCATGATGA GGATGCTGGT AATTTACGGC TGAATGTTGG CGATCGTGAA
GGTAGCGGCG ACTGGAATGA TACTACCATC AAACTCACTA AGGGCGAGGA ACTTAGTACT
TCTAAAAAGA CGACCCGTTG GCTTGATTCA TGGTCCAAGT ATAAGCCTGG AAAAATCAAT
TTGCGCACAA TTTGCAATAA GATCAATTCA GACGGCACTA AGTCTCACTA CCAGTCGGGC
GGTATTGCTG GTATTAAGAT GCAAGATGTA AAGATTTGGG ATCATACTGA AGATGCGTCA
GCGCAGAAAG CTTGCGAGAA GGATGCAAGT CAGTGCCACC CTGATAGGCA GCTGTACGAC
GATTACATTG CAAATGGTAA CTCAAAAGAT ACCACTGAGC GTACTCGTGG GTGGATTAAA
GGCAAGGCTA ACGAATCCGG CGACTACGAG TGCGTAGTTT ACGCGATTAA AGCAAAACAG
TTTAGTAAAG ACAATAACGA TTTGCTTACT AGATTCGATG CAGCTGTTGG CGCACTTAAC
AAAGATGCAA GTAAGAATAA CACTGATCCT TTGAAAGATT TCAAGTGGAA GCTTGATGGT
AATAACGGCA ACAAAAACGC GGTTAAAGGT GTTGACTACG CGTATCGCGC AATACCAATC
CACATTCACA ACGACAACCA CTTCTACAAC CCGAAGTATG TTGATGTGAG CGTTACGGCT
GGTCAAAAGG TTGAGAATGC TGTGCCGCAA AGCGTTAAGA GTGCTAACGG TGCGGATAAA
TACCAGGATG CTGTGAAGGC TGGTGCGCTT CCGGACGGAA CTTGGTTTGA GTTTAAGGAT
GCTACTCACG GATTTGAAGT AAATAATGAC GGTACTGCTG GAAACAAGGT GTCTTTAGAC
TGGTCGTATT GGGCTTCTGG CAATGCCGCC GATAAAACTG GTGAGCAAAG CAATAAGCCT
GACAATCCTT CCAAGCAAAA GAAGGGCAAG CACAGTTCCA AGGATGACGG CACTCGCTAC
GGCAAAGTGA CCTTCCACCC AGATCAATCT GTTGCTCCTA AAGCGTACTT GAAAGAGATT
GTCATCCATT ACCCGGATGG CTCCACTTCG GACGACTCGG ATTCTGGTAA CAACGGCAAG
CCTGTGTATG CGAAAGTTAC AGTTGGAGAC CTCAGTGGAG CTGAGAAGGA TCTTAAGATG
ACATTGCTCA GATCTCAAGA CGCTGATCCT GTTCATGACA CGCTTGGTAG TGGTAATTCT
CTTACCGTTA TGAGCGGCAC GAGCCTTACT AAGAATCCGT ATGTGCTCGC GTGGAGCTTG
AAGGATCGTA GCAATATTTC ATTGCGTATG ATGTGTGCTA AGCAAGGCGA GCAAAAGTGG
AGTCGCGGGC TTGACGATAC GCTCAATATG CACCTGAACC AGAATTATGG CGAAAGTGTA
AAGCCGTGGG CTTTTGCAAA TGCTGATCAG CGAAAGTCTT GCAGTCAAGA CAGTAAGAAT
TGCATGGCTA ACTTGCTGTA TGGCTTTACG AAGGATAAAG ATCCGAACAG CATAGAAAGT
GCTGTGTCTC GCAGTGAAGA CGATATTGCT GGCGTACCTC AAAAGGCTGG AAATTACACG
TGCGCTGTGT TTGCGTTGAA GCCGAATGCG CTGACGGTGT TTAATAACAC TGTTAATGGA
AGTCTTATTG AAGGTAACAA GTATTCGTCT ACAAATATGC AAACAACTCA GCTTGCCGGC
GTAACCGTTG GAAAAGACTG GAACAGAATT GCTGTTAATG TGACCGTGAT CGATCCGCCT
AAATTCGCTC TGCCAAAGAC CGGCGGAATG AACTGGAATG TGCTGCTTGG TGCGTTTGCT
GTGATTGGCA CGGGCGTGAT GGCGGCTGGG TTCTTCCTTG AACAAACCAA GTGGGGGCGC
GCGATGCTCG AGGCGTTGCT GCGTAAGACA CTGCTTAAAG ATTTTATTTG CAAAACTGCC
AAAAAGCTTC GCGCTTTAAG GCGACGTAGC GAAAGGTGGC GATGCTGA
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| Protein sequence | MLPAKFRGFA SRVGRLASRA LVWRKTSADG AVRTSSTAVI SSSNANTFGT ANTSFDNAVT
SSSAATSGSV TIARAACPAH TLRRALFAMF VAAATIVTML IVPPVKEANA ANVSWDYIGN
GYISPNSVAS WDVYRDFDVQ PPDINTITVN GKKKTTITWN VLFNANGCRI KKIENPNVDC
DENTALHAYD GRPDFYLILP KNIKDNSIRI TRYRTKFVGY SGRNKKFVWE ERGKDQIPSD
FNGYTNATRL PGDSDYENFW KASIEKCGLG TDATCEVDTW RRAGNFGRLF KSWEQDNAVD
SIRWIVTAEV EEGSDPYKLP FMAGWISYYG DKHKFTVFGP YDHDGDGIPD LEEFKYGLNP
KNDDDIRFPK RSKEDAVYGE VTSVKPYINT GEWVGDSYNG DFKYYKDMPN HGGRTTSEMI
PTDAGIEFTF KKNEIGNSEI LPPGVTKTYN PNNMQPGQAY INPRTGEVKY SPKASDRNKT
IHFDVQINYP DPKPNNCKMN NSIVKVKGVD IHVVSQASRY NPYYDDTTVK AGEEKNSPNP
KDRGGKKFPS GTKFKSEIYN KYQNPPTWAK INNESTGVVT FHPNKWVPAS KTGQPEKRPV
VVHYPDGSTS KDKDSGNHGD PVNAPVYVTR DNPGTGDLQL HIHKNQNGQE IDYNDGFVFR
KNREVKPQPW IDSWSVQEPG DITIRSVCAD TTNPLNLKFY LNGINGITIN GEKPWPHATD
EEQEKCRNGQ GCAANKLFDS TGRTMERTRG SITGKPLKVG NYQCTVYALK PKALKKFEDA
AKKNKDIEKQ TGSPTNIINP DTFKGLREDI DYTSRTVPIK VHSDAHYYNP QYDKVYVQAG
GKSKESAAPV SHSGANGVKG NDKSQQELVQ NGTRLPKGTW FELRTYPKDN EHVLTWYKFV
NKQSNKKSGK DEPEDSTTDA RYGKVTFSPE KTVMLGEYFA PVIVHYPDGS TSEDPDSGNL
GKPVYAPVEV TSQPIQKNDL KLNVYSQYGR RRIENNDKNG MRFRKDEVLG DATGNTKPMF
FDSWSSAKQG KIYQRMLCYK KNPQTGKPES YEIDGINGLT LAGRKGNTTS GEFIDKQPSQ
WTRATEKNKY ECTVHGKNCN RNLYLYGDEH DTVERTWGWL HGKVKENGDF VCTVYAIKDL
ENKDGKHGDL QNKFDKAVND FVKKPADRKF EEVIKSVLTD KPGSEDSPQE ATQRHIDWDS
VTFPIHVHSD AHYYNPEYKT ISMEAGTKQA TEVPKSKKNA NDANTLQDDV REGDLPDGTW
FKFKKSLSYT FFEDDQDNKA DSGDSAKNGT GQFGKVTFRP HKWFPVGSDK VQVIVHYPDG
STSEDKDSGN LGKPIYAKVD ITRSHDEDAG NLRLNVGDRE GSGDWNDTTI KLTKGEELST
SKKTTRWLDS WSKYKPGKIN LRTICNKINS DGTKSHYQSG GIAGIKMQDV KIWDHTEDAS
AQKACEKDAS QCHPDRQLYD DYIANGNSKD TTERTRGWIK GKANESGDYE CVVYAIKAKQ
FSKDNNDLLT RFDAAVGALN KDASKNNTDP LKDFKWKLDG NNGNKNAVKG VDYAYRAIPI
HIHNDNHFYN PKYVDVSVTA GQKVENAVPQ SVKSANGADK YQDAVKAGAL PDGTWFEFKD
ATHGFEVNND GTAGNKVSLD WSYWASGNAA DKTGEQSNKP DNPSKQKKGK HSSKDDGTRY
GKVTFHPDQS VAPKAYLKEI VIHYPDGSTS DDSDSGNNGK PVYAKVTVGD LSGAEKDLKM
TLLRSQDADP VHDTLGSGNS LTVMSGTSLT KNPYVLAWSL KDRSNISLRM MCAKQGEQKW
SRGLDDTLNM HLNQNYGESV KPWAFANADQ RKSCSQDSKN CMANLLYGFT KDKDPNSIES
AVSRSEDDIA GVPQKAGNYT CAVFALKPNA LTVFNNTVNG SLIEGNKYSS TNMQTTQLAG
VTVGKDWNRI AVNVTVIDPP KFALPKTGGM NWNVLLGAFA VIGTGVMAAG FFLEQTKWGR
AMLEALLRKT LLKDFICKTA KKLRALRRRS ERWRC
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