Gene HMPREF0424_0412 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0412 
Symbol 
ID8709049 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand+ 
Start bp439880 
End bp440488 
Gene Length609 bp 
Protein Length202 aa 
Translation table11 
GC content47% 
IMG OID646482527 
Productintegral membrane family protein 
Protein accessionYP_003373660 
Protein GI283782906 
COG category[S] Function unknown 
COG ID[COG4721] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.988927 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCAGAAG AAAATTATCA GTCCAACATG CAGTGGCGTG TTGCAGACAT CGCAGTTGCT 
TCCGTAATTG GCGTTGTTTC TGCTTTTATT TATTGGGTTG TTGCCATTTT TAGTGAGGTT 
CCATGGACTG CGCTAAACAG CATTCTTCCA GGTTTTGCAG GTCTTATTAA CGGTCTTTGG 
CTCTTCGCTG CTCCTTTGGC CGCAGTAATC GTGCGTAAGC CGGGTGCTGC TATTTACGCT 
GAAGTCGTAG CTGGCGTGCT CGAAGCTTTG ATGGGCAATC AGTGGGGTGG TGCTGAAACC 
TTCGCTATTG CAGTGGTTCA GGGTCTGTTT GCTGAAATTG CGTTCATTAT TTTCGCTTAC 
AAGAAGTGGA ATTTGAACAC AATGATTCTT TCCGGCGCAT TGACTGGCAT TGGTTGCTGG 
GGTTACACCT TCCTCGGTAA GTTACAGGCT GTTAGCGTAT TCGGCAAGTA TGGTCTTCCA 
TACTTCGCCA GCACAGTGGT TTCCGGAATT GTGTTTGCTG GTGTTTTAAT GTGGTTCTTG 
TATGTGGGAA TCGCTAAGAC CGGCGCGTTG GATCAGTTTG CGTCCGGTCG CGAAATACGC 
GAAAAATAG
 
Protein sequence
MSEENYQSNM QWRVADIAVA SVIGVVSAFI YWVVAIFSEV PWTALNSILP GFAGLINGLW 
LFAAPLAAVI VRKPGAAIYA EVVAGVLEAL MGNQWGGAET FAIAVVQGLF AEIAFIIFAY 
KKWNLNTMIL SGALTGIGCW GYTFLGKLQA VSVFGKYGLP YFASTVVSGI VFAGVLMWFL 
YVGIAKTGAL DQFASGREIR EK