| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0398 |
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| Symbol | |
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| ID | 8709924 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 427966 |
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| End bp | 429111 |
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| Gene Length | 1146 bp |
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| Protein Length | 381 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 646482514 |
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| Product | CHAP domain protein |
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| Protein accession | YP_003373647 |
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| Protein GI | 283782893 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3942] Surface antigen |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGACATG CTGCACATGG TGCCACAAAA GCAAAGAGGC GTGGTGATTC GCCGCTTTCG
CTGTTTGTAG CTCAGCATGG TGCGCATGGT GCGCATAGTG TGCGCGGTAT GCGTTCTGTT
CAGACTAATC GTGTTAGTGA GCGTTTGGCT GCGGTTGCTA CTAGCAATGG TGCTGTTGTA
GAGCTTCCAG AAGCTGTTTC TGAGCGTTTA CAGGAGCTTG TTCCTCAAAG CAGGCGCGCG
CTTAGGTTGT CTAAGCTTGC TAATGAACGT CGTCGCAATG TAATACTTTC GGCTTCTCTT
GTTGCAATGG TTGGTACTGT TGCAGCTACT ATGGCTTTAA CTAAGGTTAA TAGTTTTGCT
TCTCGCGCTT CCGAATTTGA GCCGTCTATG ACTGCAGAGG GCGACGCATC TTCAACAGTT
TCGCGTTCTA GCCAGCGTGA GTCTCTTGAT CCTATGGCGA CTATTAATAA CACTGTTGAC
TCTATTGAGA ATGCTGCTAA GAAATTGCAT AATGCGGATT CTGCTGATGC TGCAAATAGC
GCGAATGAAA ATAGTTCTGC CCGCTCGGAT TCGAAGCATA AAAACTTAGC CAGTAAGGTT
GCTAATTCAG TACAACCTGG CACTTTTTCT ACTATATCTT CGAAGTCTGA TTCGTGGAAT
TTAGGTTCTG ATTCAGGCTT TAATATTGCG GAAATGTCGC GTTCTGCTGC GAATAATCCT
AAGGTTGCTT TGTTGATAGA TAAAGACTTT GACGTTTTGC CGAAGGGCTT TAATCCAAAT
CACGCAACTG GGGATACCGG TAACGCGTAT GAGTTCAGCC AGTGCACGTG GTGGGTGTAT
ATTCGCCGCC ATCAGTTAGG TTTGCCTGTT GGCTCGCATT TTGGCAACGG AAATATGTGG
GCTGATTCTG CGCGCAGTCT TGGCTATTGG GTAGATAATT CCGCTCGTCA TGTTGGCGAT
ATCATGGTGT TCCGCTCGGG TCAGGCTGGT TCTGATCCAT TCTATGGGCA CGTTGCAGTT
GTTGAAAAAA TTAATTCAGA CGGTTCTATT GAAACTTCTG AATGTGGCGC TTCTTACCAA
GGACGAACTT TCTCGCGCAA GTTTGACGCT AAGGAAGTTT CTCAATATCA GTTTATTCAT
TACTAA
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| Protein sequence | MRHAAHGATK AKRRGDSPLS LFVAQHGAHG AHSVRGMRSV QTNRVSERLA AVATSNGAVV
ELPEAVSERL QELVPQSRRA LRLSKLANER RRNVILSASL VAMVGTVAAT MALTKVNSFA
SRASEFEPSM TAEGDASSTV SRSSQRESLD PMATINNTVD SIENAAKKLH NADSADAANS
ANENSSARSD SKHKNLASKV ANSVQPGTFS TISSKSDSWN LGSDSGFNIA EMSRSAANNP
KVALLIDKDF DVLPKGFNPN HATGDTGNAY EFSQCTWWVY IRRHQLGLPV GSHFGNGNMW
ADSARSLGYW VDNSARHVGD IMVFRSGQAG SDPFYGHVAV VEKINSDGSI ETSECGASYQ
GRTFSRKFDA KEVSQYQFIH Y
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