Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_0398 |
Symbol | |
ID | 8709924 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | + |
Start bp | 427966 |
End bp | 429111 |
Gene Length | 1146 bp |
Protein Length | 381 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 646482514 |
Product | CHAP domain protein |
Protein accession | YP_003373647 |
Protein GI | 283782893 |
COG category | [R] General function prediction only |
COG ID | [COG3942] Surface antigen |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGACATG CTGCACATGG TGCCACAAAA GCAAAGAGGC GTGGTGATTC GCCGCTTTCG CTGTTTGTAG CTCAGCATGG TGCGCATGGT GCGCATAGTG TGCGCGGTAT GCGTTCTGTT CAGACTAATC GTGTTAGTGA GCGTTTGGCT GCGGTTGCTA CTAGCAATGG TGCTGTTGTA GAGCTTCCAG AAGCTGTTTC TGAGCGTTTA CAGGAGCTTG TTCCTCAAAG CAGGCGCGCG CTTAGGTTGT CTAAGCTTGC TAATGAACGT CGTCGCAATG TAATACTTTC GGCTTCTCTT GTTGCAATGG TTGGTACTGT TGCAGCTACT ATGGCTTTAA CTAAGGTTAA TAGTTTTGCT TCTCGCGCTT CCGAATTTGA GCCGTCTATG ACTGCAGAGG GCGACGCATC TTCAACAGTT TCGCGTTCTA GCCAGCGTGA GTCTCTTGAT CCTATGGCGA CTATTAATAA CACTGTTGAC TCTATTGAGA ATGCTGCTAA GAAATTGCAT AATGCGGATT CTGCTGATGC TGCAAATAGC GCGAATGAAA ATAGTTCTGC CCGCTCGGAT TCGAAGCATA AAAACTTAGC CAGTAAGGTT GCTAATTCAG TACAACCTGG CACTTTTTCT ACTATATCTT CGAAGTCTGA TTCGTGGAAT TTAGGTTCTG ATTCAGGCTT TAATATTGCG GAAATGTCGC GTTCTGCTGC GAATAATCCT AAGGTTGCTT TGTTGATAGA TAAAGACTTT GACGTTTTGC CGAAGGGCTT TAATCCAAAT CACGCAACTG GGGATACCGG TAACGCGTAT GAGTTCAGCC AGTGCACGTG GTGGGTGTAT ATTCGCCGCC ATCAGTTAGG TTTGCCTGTT GGCTCGCATT TTGGCAACGG AAATATGTGG GCTGATTCTG CGCGCAGTCT TGGCTATTGG GTAGATAATT CCGCTCGTCA TGTTGGCGAT ATCATGGTGT TCCGCTCGGG TCAGGCTGGT TCTGATCCAT TCTATGGGCA CGTTGCAGTT GTTGAAAAAA TTAATTCAGA CGGTTCTATT GAAACTTCTG AATGTGGCGC TTCTTACCAA GGACGAACTT TCTCGCGCAA GTTTGACGCT AAGGAAGTTT CTCAATATCA GTTTATTCAT TACTAA
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Protein sequence | MRHAAHGATK AKRRGDSPLS LFVAQHGAHG AHSVRGMRSV QTNRVSERLA AVATSNGAVV ELPEAVSERL QELVPQSRRA LRLSKLANER RRNVILSASL VAMVGTVAAT MALTKVNSFA SRASEFEPSM TAEGDASSTV SRSSQRESLD PMATINNTVD SIENAAKKLH NADSADAANS ANENSSARSD SKHKNLASKV ANSVQPGTFS TISSKSDSWN LGSDSGFNIA EMSRSAANNP KVALLIDKDF DVLPKGFNPN HATGDTGNAY EFSQCTWWVY IRRHQLGLPV GSHFGNGNMW ADSARSLGYW VDNSARHVGD IMVFRSGQAG SDPFYGHVAV VEKINSDGSI ETSECGASYQ GRTFSRKFDA KEVSQYQFIH Y
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