Gene HMPREF0424_0390 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0390 
Symbol 
ID8708814 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand+ 
Start bp418683 
End bp419378 
Gene Length696 bp 
Protein Length231 aa 
Translation table11 
GC content52% 
IMG OID646482505 
Producthypothetical protein 
Protein accessionYP_003373639 
Protein GI283782885 
COG category[R] General function prediction only 
COG ID[COG1011] Predicted hydrolase (HAD superfamily) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.836238 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGGAATTA TGGGCGCTGA AATAAAGGCA GTTAGTGCAA GCGGTATCTG TGATATTCGC 
GAAATAAGTG ATGTGCGCAA TGATGTGCGC AATGATGTGC ACGAAAATAG TGATGTGCGC 
AAAAATAGTA TCCGCGAGTA TGCTTTGCGC GGAATAACTG ACGTTGTTTT CGACTTGCAA 
TTGCTTGTAG ATTGGGATGC GCGCCGCACT CTGGCTGCAG ATTATCCTGA TTTTATTGGG 
GAAGTGCTCT TTAGTTTCGA GCCGGAATGG GGTTTTGAGT TTCACGAGTC ATTGCGCGAG 
GCTGGGTGGA GCTGCAAGCA GGCGTTGGAT TCGTTTGATG AGCATCACGG GCCGGCAGTT 
ACGTGGCTGT ATCGCTTGTA TTTTGAGCGT TTTGAGCGCG GTTTCGCTGG CGAGCGCGCG 
GATGTTTCGG CTGTGGCGCG CGAGTTGATT GCGAGCGGCG TGCGCGTGTG GGCGCTTGGT 
AACGCTTCTT GCGATTGGGT AAACTGCGCG CGCAAAACTT GCCCAATACT CGGCGAGCTT 
AACGGCGTTT GTGCATCTTA CGAATCGCAT TTGCGCAAAC CCGACGTAAT GCTTTACCGC 
ACGTTTTTGC AACAAACCGG TCTTTCCGCT GCTTTCGCGC TTTTTCTCGA AAGTGACTCT 
CGCGCAGCTT CTGCAGCGTC GCTGCTTTAT TCTTAA
 
Protein sequence
MGIMGAEIKA VSASGICDIR EISDVRNDVR NDVHENSDVR KNSIREYALR GITDVVFDLQ 
LLVDWDARRT LAADYPDFIG EVLFSFEPEW GFEFHESLRE AGWSCKQALD SFDEHHGPAV 
TWLYRLYFER FERGFAGERA DVSAVARELI ASGVRVWALG NASCDWVNCA RKTCPILGEL 
NGVCASYESH LRKPDVMLYR TFLQQTGLSA AFALFLESDS RAASAASLLY S