Gene HMPREF0424_0389 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0389 
Symbol 
ID8709019 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand- 
Start bp419375 
End bp420040 
Gene Length666 bp 
Protein Length221 aa 
Translation table11 
GC content46% 
IMG OID646482506 
Producthypothetical protein 
Protein accessionYP_003373640 
Protein GI283782886 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.642926 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTGCGATT TATCAGTAAA TACGAAAGCG CAAAAGCTTG CGAAAGCAGA AAATCTTGCG 
GAAGAAATCA CTAAACTCGA GTGGGATCAG TTCCAGCTTA CAGAAAACGA AGGTGGACGC 
GCGAATTGCC AAGGAAACTG GCCAACTTTT CGCATTATGC GCATAAGTCA GTTTTTGGCG 
TGGCCGCTTG ATTTGCAGGA GTCTTATAAA CAGGATCTTG AGCTCGCGAA TAGCGACGGC 
GGCAATTTGA TTACGGAAAA GTATGCGCGA ATGATGGAGT CGACTGCGCC GGAAATTTTT 
GAGCGCACGA TTAAGCCTTA TATTAAGCCG ATTTTGGAGC CTAGAAAAAG CGCGCAGGAG 
CAGATTATTT TAACTCAAGT TGAGTGGGCT GTGGGTTTTC GCAATCGCTA CCCAAATTTG 
GGTTTTGCGA TGCGCGTGCT TAAAACTAGC GAGGATACGG CAGAGAATAC GTCTTTTGAA 
ACGTATTTGC GAGGCGAATT AAGCACGTAT TCTGACGCAA CTTTCGCTAA ATACCAGCGT 
TTTGTACATA ACTTGCGCGC GGAAAACCTA AATCTTACGC AAATGATAAT CGCGAATACC 
GTGCACATGT ATGGCTACGA TTCGCTCGAA GCGGCCGAGC GCGCGCAGAT TAGAAATGCA 
GCTTAA
 
Protein sequence
MCDLSVNTKA QKLAKAENLA EEITKLEWDQ FQLTENEGGR ANCQGNWPTF RIMRISQFLA 
WPLDLQESYK QDLELANSDG GNLITEKYAR MMESTAPEIF ERTIKPYIKP ILEPRKSAQE 
QIILTQVEWA VGFRNRYPNL GFAMRVLKTS EDTAENTSFE TYLRGELSTY SDATFAKYQR 
FVHNLRAENL NLTQMIIANT VHMYGYDSLE AAERAQIRNA A