| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0386 |
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| Symbol | sufS |
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| ID | 8709207 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 415982 |
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| End bp | 417340 |
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| Gene Length | 1359 bp |
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| Protein Length | 452 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 646482502 |
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| Product | cysteine desulfurase, SufS family protein |
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| Protein accession | YP_003373636 |
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| Protein GI | 283782882 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0520] Selenocysteine lyase |
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| TIGRFAM ID | [TIGR01979] cysteine desulfurases, SufS subfamily |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.559739 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTACAG TGACTACAGA AAATATTATG CGAGAATTTA GTGATTTGCG CTCGCAGTTT
CCGATTTTAA GTCGCACGGT TCACGGCACT TCGCTTCACG ATACTGTGCA CGGAAAACCC
TTGATTTACT TGGATTCTGC AGCTACTTCG CAAAAGCCGC AAGTTGTAAT CGACGCCGAA
AAAGAGTTTT ACGAAACAAT TAACGCTGGT GTGCACAGGG GAGCGCACGA GTTGGCGGCA
CTTTCCACGG TTGCGTTCGA AGAAGCGCGT GCGAAAGTTG CGCGTCTCGT TGGAGCTTGC
GCGGATGCTG GCAGCGAGGA AATTATTGTT ACTCCGGGCG CGACCGGCGC GTTTAATCTT
TTCGCAACTG CTATTGGTAA CGCTAGTGCG AAGGCGAGAA TTTGCAAAAA AGACAGCGAT
GATTCTGCTG ATTTCCGCCA AAATTTTGTG CTTCGAGAAG GCGATGTAAT AGTCGTATCT
CGCGCAGATC ATCACTCTGT TTTGCTACCA TTTCAAGAGC TGGCTCTTCG CACTGGAGCG
GAGCTTCGTT GGATTGACGT AACAGAGGAC GGCCGCGTGC GCACGGACGC GGATTATTTG
CGAACAATTA TTGACGAGCG CACGAAAATC GTTGCAGTTA CGCATATTAG CAACGTTACT
GGCGCGATTA CGGATGTTTC GTCGATTTGC AAGCGCGCTC ACGAAGTTGG TGCGATTTTT
GTGCTCGACG CATGCCAGTC AGTGCCTCAT ATTCCGGTTG ATTTTCACAC TTTAAACGTT
GATTTTGCGG CATTTAGTGC GCATAAAATG TATGGTCCTA CAGGAGTTGG ATTCTTGTAT
GGTCGCCGCG AGCTTTTGAA CGCGCTTCCA CCTGCCAATT TTGGCGGCTC AATGGTAGAG
CTTGCGTGGC TTAACAAGCC GGCGCAATAC ATGGATGCGC CTTACCGTTT TGAGGCTGGA
ACTCAGCCGG TTGCGCAAAT GGTTGCGGCT GGCGTTGCAG CGGATTGGTT GCGCGCGGTG
GGCATGAATA AAGTTGCAGA GCATGAGCGG GAAATTGCTG CAGAATTGCT AAAATTGCAA
GACGTTCCGG GAGTTCGCAT TTTGGGGCCG GCTGATTTAG AGAATCGAAT TGGCACGGTT
GCTTTTGAAG TTGAAGGTGT GCATCCGCAC GATGTTGGAC AGTTTTTGGA CGCGCAGGGC
ATTGCGATTC GCGTCGGACA CCATTGTGCT CAGCCGATTC ACCGTCATTT TGGCGTGTAT
GCTTCGAATC GCGCTTCTGT TGGCGTTTAC AACACAGTTG ACGAGGCTCG CGCGTTTGTT
GAAGCAGTCT CACACGTTCG CGCCTACTTT GGCGCATAA
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| Protein sequence | MTTVTTENIM REFSDLRSQF PILSRTVHGT SLHDTVHGKP LIYLDSAATS QKPQVVIDAE
KEFYETINAG VHRGAHELAA LSTVAFEEAR AKVARLVGAC ADAGSEEIIV TPGATGAFNL
FATAIGNASA KARICKKDSD DSADFRQNFV LREGDVIVVS RADHHSVLLP FQELALRTGA
ELRWIDVTED GRVRTDADYL RTIIDERTKI VAVTHISNVT GAITDVSSIC KRAHEVGAIF
VLDACQSVPH IPVDFHTLNV DFAAFSAHKM YGPTGVGFLY GRRELLNALP PANFGGSMVE
LAWLNKPAQY MDAPYRFEAG TQPVAQMVAA GVAADWLRAV GMNKVAEHER EIAAELLKLQ
DVPGVRILGP ADLENRIGTV AFEVEGVHPH DVGQFLDAQG IAIRVGHHCA QPIHRHFGVY
ASNRASVGVY NTVDEARAFV EAVSHVRAYF GA
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