| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0383 |
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| Symbol | sufB |
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| ID | 8709327 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 412214 |
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| End bp | 413872 |
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| Gene Length | 1659 bp |
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| Protein Length | 552 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 646482499 |
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| Product | FeS assembly protein SufB |
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| Protein accession | YP_003373633 |
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| Protein GI | 283782879 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0719] ABC-type transport system involved in Fe-S cluster assembly, permease component |
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| TIGRFAM ID | [TIGR01980] FeS assembly protein SufB |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAGTGGGG AGAGTGCAAA AGTAGCGCTT GGGGAGCAGC TTTTGCCAAT TGATACGTAC
CGCGCGCAGG TGTGCGTTAA GTATGGAGGT GTTACAGGCT TTATGAGCGA TACTGGCAAT
ATGAATGATA CTGGCGTTAC TGGCGATACA AGCGTTGCAG CAAGCGATGG TAATCTAGCA
AAAAATAAAG CTGCAGACGT TGAAATGAGC CAGTATGTGG CAGATCGCGC TCGCGTAAAC
GAAGAGAAAA TCCGCCAAGA TGAGCAAATT GTTGCTGAAT TTGGTGATTA CAATTACGGC
TGGCACGATT CGGACGCTGC AGGCGAGGCT GCAAAAAAAG GTATTGACGA GTCGGTTGTT
CGCGCAATTT CTGCCGATAA AAACGAGCCG GAGTGGATGC TAGATCTTCG CTTGCAAGGC
TACCGCGCGT TTTTGCAAAA GCCAATGCCG GATTGGGGCG TGGATTTAAG CGGTTTTGAC
GCTGACGATT TTAAATACTA CGTGCGCCCG GTTCACGATC AAGCAAAAAC TTGGGACGAT
TTGCCGGAAG ATATTCGCAA AACTTACGAT CGCTTAGGCA TTCCGGAAGC GGAGAAAAAG
CGCTTAGTTT CAGGCGTTGC AGCACAGTAC GAGTCGGAAG TTATTTACAA TTCGATTCGC
GAAGACTTGG CAGCTCAAGG CGTGATTTTT GTTGACACGG ATACGGCAGT GCAAAAGTAT
CCGGAGCTTG TAAAAAAGTA TTTCGCAACC GTGATCCCTG TTGACGACAA CAAGTTTGCA
GCTCTTAACA CCGCGGCTTG GAGTGGCGGC TCGTTCGTGT ATGTTCCAAA AGGCGTGCAC
GTGGATATTC CGCTTCAAGC TTACTTTAGA ATTAATACGC CGAACATGGG TCAGTTTGAG
CGAACGCTTA TTATTGCGGA CGAAGGCTCT TATGTGCATT ACGTTGAAGG TTGCACGGCT
CCAATTTATT CCACGGATTC GCTTCACGCT GCAAACGTTG AAATTGTTGT GGAAAAGCAT
GCGCGTGTGC GTTACACAAC AGTGCAAAAC TGGTCAAATA ACGTGTATAA CTTGGTAACT
CAGCGAGCTT ACGTGCGCGA GGGCGGCACA ATGGAGTGGG TTGACGGAAA CATCGGCTCC
AAAGCTACTA TGAAGTATCC TGCTTGTATT CTTGCCGAGC CTTACGCAAA AGCGGAGACT
ATGTCTTTGA GTTTTGCTGG CCGCGGACAA TATCAAGATA CTGGTGCGAA GATGATTCAT
TTAGCTCCTC ACACGAGTTC TACGATTGTT GCTAAGTCGA TTTCGCGCGG CGGCGGACGT
TCAGCTTACC GCGGTCTTGT GAAGATTATT AAGGGTGCGA AGGGCTCTAG TTCGTCTGTT
GTGTGCGATG CTTTGCTTGT TGACGATTTT TCCAGGTCCG ATACTTATCC GCATGTTGAC
GTGCGCGAAG ATGACGTTTC GATGGCTCAC GAGGCCACTG TTTCCAAGGT TTCGGAGGAT
CAGCTTTTCT ATTTGATGAG TCGAGGGCTT GAAGAAAAAG AGGCTATGGG CATGATTGTT
CGCGGCTTCG TGGAGCCGAT TAGCCGCGAG CTGCCAATGG AGTACGCGCT TGAGTTGAAT
CGCTTAGTTG AGTTGCAAAT GGAAGGATCC GTGGGCTGA
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| Protein sequence | MSGESAKVAL GEQLLPIDTY RAQVCVKYGG VTGFMSDTGN MNDTGVTGDT SVAASDGNLA
KNKAADVEMS QYVADRARVN EEKIRQDEQI VAEFGDYNYG WHDSDAAGEA AKKGIDESVV
RAISADKNEP EWMLDLRLQG YRAFLQKPMP DWGVDLSGFD ADDFKYYVRP VHDQAKTWDD
LPEDIRKTYD RLGIPEAEKK RLVSGVAAQY ESEVIYNSIR EDLAAQGVIF VDTDTAVQKY
PELVKKYFAT VIPVDDNKFA ALNTAAWSGG SFVYVPKGVH VDIPLQAYFR INTPNMGQFE
RTLIIADEGS YVHYVEGCTA PIYSTDSLHA ANVEIVVEKH ARVRYTTVQN WSNNVYNLVT
QRAYVREGGT MEWVDGNIGS KATMKYPACI LAEPYAKAET MSLSFAGRGQ YQDTGAKMIH
LAPHTSSTIV AKSISRGGGR SAYRGLVKII KGAKGSSSSV VCDALLVDDF SRSDTYPHVD
VREDDVSMAH EATVSKVSED QLFYLMSRGL EEKEAMGMIV RGFVEPISRE LPMEYALELN
RLVELQMEGS VG
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