| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0375 |
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| Symbol | alaS |
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| ID | 8709793 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 401843 |
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| End bp | 404527 |
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| Gene Length | 2685 bp |
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| Protein Length | 894 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 646482491 |
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| Product | alanine--tRNA ligase |
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| Protein accession | YP_003373625 |
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| Protein GI | 283782871 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0013] Alanyl-tRNA synthetase |
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| TIGRFAM ID | [TIGR00344] alanine--tRNA ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCACAG CAGAAATTGC AAAGCGTTAT CTTGACTATT TTGCTAAGAA TGGTCATATG
GTTGTTCCTT CGGCTTCTCT TATTTCGCCG AACCCAACTA CGTTATTTAC TATCGCAGGC
ATGGTGCCGT TTATTCCTTA CTTGCTCGGA GAGCAGACGC CTCCTTCGCG TCGTATGGCT
TCGAATCAGA AGTGCGTTCG CACTCTAGAT ATTGACGAAG TTGGTAAGAC TACTCGTCAC
GGCACTTTCT TCCAGATGGT TGGTAACTTC TCGTTTGGCG ATTATTTTAA AGAGGAAGCT
ATTCACTACG CTTGGGAGCT TTTGACAACT CCTCAAGATA AGGGCGGCTA CGGTTTTGAC
CCTGAAAAGC TTTGGGTTAC TACTTATACT GACGACGATG AAGCCCGCGC AATTTGGAAG
AACGAAGGCT TCGACCCAGA GCATATGCAA GTTTTCGGTA TGGAAGATAA CTTCTGGACT
ACCGGCGGTC CTGGTCCTGG CGGTCCATGC TCCGAAATCT ACGTGGATCG CGGTCCTAAG
TATGGTCGCG ATGGAGGTCC GGCTGCTGAC GAATCTCGTT TTATTGAGAT TTGGGATTTG
GTTTTTGAAA ACTACCAGGT AGATAACGTC AAGTCTAAAA CTGATTTGCA TATTGCTGGC
GAGCTTGATC AGAAGAATAT TGATACCGGC GCTGGTTTGG AGCGTTTGGC TTACCTTATG
CAAGGTAAGG AAAATATTTA CGAAACTGAC GAAGTTTACC CAGTTATTGA AGCTGCGGAA
AAGCTTAGTG GCGTAAAGTA CGGCGATAAT AATGATGCTG ACGTGCGTTT CCGCGTTGTA
GCAGATCACG TGCGTTCCGC TTTGATGATT ATGAGCGATG GCGTGCGCCC AAGTAATGTT
GGCCGCGGCT ATGTGCTTCG TCGTCTTCTT CGCAGAACTG TTCGCGCAAT GCGTATGCTC
GGCGTTCAAG ATCCAGTTTT GCCAACGCTG TTCCCAGTTT CTAAGACTGC TATGGAACCA
AGCTATCCAG AGCTTAACGA TACTTTCCAC GAGGTTAGCG AAGCGGCTTA CGGTGAAGAG
GACGCTTTCC GTCGCACTCT TGAAAAGGGC ACAACTATTC TCGACTTGGC TGTTGAAAAA
GCTAAGAAAG AGCACAAGGA TGACCCTATG GTTGGCGGCT CCGACGCGTT TACTTTGCAC
GATACTTACG GCTTCCCAAT TGAGCTTACT CTTGAGATGG CAGCCGAGCA GGGTGTTAAG
GTCGACGAAG CTAAGTTCCG CGAGCTTATG AGCGAGCAGA AAGGTCGCGC TCGCGCGGAT
GCTTTGAAGA AGCGCCACAA TGTGGATGTT AGCGTTTATG ACGACATTAA GAAGGCTCTC
GAAAAGCCAA TTGACTTCCT CGGTTACACT GACTTCTCCA GCCGTTCTAA CGTTTTGGCA
ATTGTTGAAG CAGGTAAAGG CTCTGTTAAA AGCGTTACTG CTCCTGCAAA CGTTGAGATT
ATTCTCGACC GCACGCCATT CTACGCTGAG CGCGGCGGCC AGATTGCTGA CCAGGGCGAG
ATTATTTCCG ATGACGGCGC GATTTTGGAA GTTGACGATG TTCAGCGACC AATCAAGGAT
TTGATTGTTC ACAGCTGCCG ACTTACCGAA GGAACTCTTA GCGTTGGTGC TCCTGTAAAC
ACCAATATTG ACCAGGTTCG TAGAGCTGCT TTGGCTCGAA GCCACACTGC TACGCATACC
CTTCACAAGG CTTTGCGAGA AGAGCTTGGT CCACAGGCAA CTCAGCGCGG TTCCGTGGTT
GATCCAGACC GCTTGCGCTT CGACTTCCAG TGGCCAAAGG CTGTTGATAA GGATGCGCTT
TCTCGCGTTG AAGCTCGCGT AAACGAGCGT ATTCGCGACG ATTTGCAGGT TGTTCCTAAG
GAAATGCCAA TCGACGACGC TTTTAAGCTT GGAGCAATGC ACTTGTTCGG CGAAAAGTAC
GGCGATGTTG TGCGCGTTGT TGAAATCGGC GACGGTTGGA GCCGCGAGCT TTGCGGTGGC
ACTCACGCTA AGAGCACCGG AAAGATTGGT ATGGTTACAA TCCTTTCCGA GTCTTCTATT
GGCTCTGGTG TGCGCAGAAT CGACGCTCTT TGCGGCGAGG CAGCGTACGA GTATGGCGCC
CGCGAGCACA CTTTGGTTGC GCAATTAGCA GACATGGTTA ATGCTCGCCC AGACGAGTTG
GTTGAACGTT TGGAATCTTT GCTTAACAAG ATGAAGGATT CTGATCGTAA GCTTGCTTCT
GTTTACGAAG CTCAATTAAA TGAAGCTGTA CCAACATTAG TTGATGAAGT AAAGAATAGT
AACGAAAAAG TTAAGTTGGC TCTTAAGAAT GTTGGCAACT TTGGCTCATT CGATGCTTTG
CGCAAGACAG TCCTAGATAT TCGTGCTCGT TTAGGTGAAG ATGCTCCAGT GGTTGTTGCA
CTTGCTGGTG TTAATGAAGA CGATCGACCA ATGATTGCAG TAGCTACAAA CGAAGCTGCT
CGCGGTCTTG GTGCTAAGGC TGGCGACTTG GTTCGTACTG CTTCCAAGGT GCTTGGTGGC
GGCGGTGGCG GCAAGCCAGA CTTCGCTCAG GGCGGTGGTA CAGATGCTTC TAAGCTTGAT
GAAGCTCTCG AAGCTGCGAA ATCAGAAGTA GCTAAGCTCG CCTAG
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| Protein sequence | MRTAEIAKRY LDYFAKNGHM VVPSASLISP NPTTLFTIAG MVPFIPYLLG EQTPPSRRMA
SNQKCVRTLD IDEVGKTTRH GTFFQMVGNF SFGDYFKEEA IHYAWELLTT PQDKGGYGFD
PEKLWVTTYT DDDEARAIWK NEGFDPEHMQ VFGMEDNFWT TGGPGPGGPC SEIYVDRGPK
YGRDGGPAAD ESRFIEIWDL VFENYQVDNV KSKTDLHIAG ELDQKNIDTG AGLERLAYLM
QGKENIYETD EVYPVIEAAE KLSGVKYGDN NDADVRFRVV ADHVRSALMI MSDGVRPSNV
GRGYVLRRLL RRTVRAMRML GVQDPVLPTL FPVSKTAMEP SYPELNDTFH EVSEAAYGEE
DAFRRTLEKG TTILDLAVEK AKKEHKDDPM VGGSDAFTLH DTYGFPIELT LEMAAEQGVK
VDEAKFRELM SEQKGRARAD ALKKRHNVDV SVYDDIKKAL EKPIDFLGYT DFSSRSNVLA
IVEAGKGSVK SVTAPANVEI ILDRTPFYAE RGGQIADQGE IISDDGAILE VDDVQRPIKD
LIVHSCRLTE GTLSVGAPVN TNIDQVRRAA LARSHTATHT LHKALREELG PQATQRGSVV
DPDRLRFDFQ WPKAVDKDAL SRVEARVNER IRDDLQVVPK EMPIDDAFKL GAMHLFGEKY
GDVVRVVEIG DGWSRELCGG THAKSTGKIG MVTILSESSI GSGVRRIDAL CGEAAYEYGA
REHTLVAQLA DMVNARPDEL VERLESLLNK MKDSDRKLAS VYEAQLNEAV PTLVDEVKNS
NEKVKLALKN VGNFGSFDAL RKTVLDIRAR LGEDAPVVVA LAGVNEDDRP MIAVATNEAA
RGLGAKAGDL VRTASKVLGG GGGGKPDFAQ GGGTDASKLD EALEAAKSEV AKLA
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