| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0368 |
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| Symbol | |
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| ID | 8709465 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 398082 |
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| End bp | 398864 |
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| Gene Length | 783 bp |
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| Protein Length | 260 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 646482484 |
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| Product | putative lipoprotein releasing system, ATP-binding protein |
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| Protein accession | YP_003373618 |
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| Protein GI | 283782864 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAGATA AGAGTCAAAA ACTGCCAAGT AATGAGTTTG ATATTTTACC TGTTGTTGAG
CTTACTCGTG TAACTCGCGA ATTTATGCGC AGAAAACACA AATTTTTTGC AGTAAATAAC
GTGAGTTTTG CGCTAAATAG CGGCGATTTT GTGGCAATCG TTGGAAAGTC AGGTAACGGA
AAATCTACTT TACTAAATTT GATTGCTGGG TTATTGAAGC CAACGCATGG AAGTGTAAAA
GTTTGCGGCG AAGAGATTTC TGAACGCACT TTTAGTGATG CAAAAATGTC TCGTTTGCGC
GCATGTGATA TAGGTTTTGT GACGCAATCG CAGACGCTTT TACAAAATCT TACTGTGCAT
GACAACATAC TTTTACCTGT GCAAATTGCA GCTAGTGCTT GTGAAGTAAG TAAGTCTGGA
ATAAGTAAGG CTGAAGTAAG TAAGTCTGAA GTAAGCGAAG ATTTAAACGA GACTCGCGCG
TTAGAACTTT GCAAGCAATT GCATATTGAA GATTTACTGT GGTGCTACCC AAATGAGCTT
TCGGGTGGTG AAATGCGTCG CGTAATGATT GTGCGCGCGC TAATAAACAA TCCAAAGCTT
CTTATTCTTG ACGAGCCTAC TGGCGATTTG GATGTAGAGC ATACTCGCAT AGTTGTGAAA
ATGTTGCGCG AGGCTGCAAA AAATGGTGTG GCAGTGCTCA TGGTAACTCA CGATGTTGAG
GCTGCTCGCT GTGCGGATCG CACATACACA ATGGATTGCG GATTGACTTG CCGGAGCGCT
TGA
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| Protein sequence | MEDKSQKLPS NEFDILPVVE LTRVTREFMR RKHKFFAVNN VSFALNSGDF VAIVGKSGNG
KSTLLNLIAG LLKPTHGSVK VCGEEISERT FSDAKMSRLR ACDIGFVTQS QTLLQNLTVH
DNILLPVQIA ASACEVSKSG ISKAEVSKSE VSEDLNETRA LELCKQLHIE DLLWCYPNEL
SGGEMRRVMI VRALINNPKL LILDEPTGDL DVEHTRIVVK MLREAAKNGV AVLMVTHDVE
AARCADRTYT MDCGLTCRSA
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