| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0359 |
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| Symbol | |
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| ID | 8710053 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 387350 |
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| End bp | 388663 |
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| Gene Length | 1314 bp |
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| Protein Length | 437 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 646482475 |
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| Product | putative hydroxymethylglutaryl-CoA synthase |
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| Protein accession | YP_003373609 |
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| Protein GI | 283782855 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG3425] 3-hydroxy-3-methylglutaryl CoA synthase |
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| TIGRFAM ID | [TIGR01835] 3-hydroxy-3-methylglutaryl CoA synthase, prokaryotic clade |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCACAC AAAATATCAA AATATCAGCA ACCGCAGCAG CCAACACAAC CACAACCTCC
GCAACCACTC CCCTTACCGT CGGCATTGAC CGCATCTCCT TCGCAACGCC GCACTATTAC
CTAAACCTCG AAGAATTGGC GGAACACCGC GGAATCGACC CTAACAAATT CACAATCGGA
ATCGGTCAAA GCGAACAATC CGTGCCACCA AATCACCAAG ACATCGTCAC TCTCGCCGCG
CAAGCCGCAT TCCCACTACT ACCATACATC GATAGCAATC GCCTCAAAAT GCTCATCGTC
GGCACAGAAA GCGGAGTCGA CGCAAGTAAA TCCAGCGCGC TATACGTTCA AAATCTGCTA
AAACTCACGC CGTGGGTGCG CTCTATTGAA GTAAAAGAGG CTTGCTACGG CGGAACGGCA
GCTTTGATGA TGGCATGCGA TTACGTGCGC GCGCACGCAG AAAAAAATCC GCAAGTGCTT
GTTATTGCAG CCGATATTGC GCGCTACGGG CTTGCTACCC CTGGCGAAGT TACGCAAGGC
GCTGGGGCTG TGGCAATGCT TGTGAGCGCG AATCCGCACG TGCTTAAAAT TAACGACGAC
AGCGTTGTAA AATCCGCGGA TATTCAGGAC TTTTGGCGAC CTGTTTACCA AGACACCGCT
CTTGCTCGCG GCCAGTTTTC AACCGAGCAA TACATACAAT TTTTCTGCGA AGTTTGGCAA
AAGTATTGCG CGCAAAACGA TTGCAATTTC AGCGATTTCG CCGGATTGTG CTTCCATTTG
CCATATACGA AAATGGGTTT GAAAGCACTT AAGGCTGCGA TGGATTCTTG CGCAAATTCT
TGCTCTGATT CTTGCGATAA TAGCAACCTA AGCGAGTCGT CGCGCAATCG CTTACTTTCG
CGCTACGAAA CCAGCACGAA GTACAGCCGT CGTGTAGGCA ACATCTATAC GGGTTCCCTG
TATTTGGGAT TGCTGTCTTT ACTTGAGTTA GACGAATTTA CTTGCGAAAA TAGTGATCTT
ACTGCACTTA AAAGCGGCGA TAAGATTGGA CTATTTTCTT ATGGTTCCGG CGCTGTTGGT
GAATTTTTCA GCGGCACGAT TGCGCCAGGA TTTAGAGATG CGCTGTTTGC GCGCGAGCAT
GCGGATATGC TTGATTCGCG CGTGCATTTA AGCGTTGCTG ATTACGAGGA GATGTTTGAA
AGCGTTGCGC CTTACGCTCC GGAAGATTTC GAAAGCAGCA CGTCTTGCCG CGAAGGTGCA
AGCTTCTTCC TGGACGACAT CACATCACAA GAGCGTCACT ACTCCGCGCG CTAA
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| Protein sequence | MSTQNIKISA TAAANTTTTS ATTPLTVGID RISFATPHYY LNLEELAEHR GIDPNKFTIG
IGQSEQSVPP NHQDIVTLAA QAAFPLLPYI DSNRLKMLIV GTESGVDASK SSALYVQNLL
KLTPWVRSIE VKEACYGGTA ALMMACDYVR AHAEKNPQVL VIAADIARYG LATPGEVTQG
AGAVAMLVSA NPHVLKINDD SVVKSADIQD FWRPVYQDTA LARGQFSTEQ YIQFFCEVWQ
KYCAQNDCNF SDFAGLCFHL PYTKMGLKAL KAAMDSCANS CSDSCDNSNL SESSRNRLLS
RYETSTKYSR RVGNIYTGSL YLGLLSLLEL DEFTCENSDL TALKSGDKIG LFSYGSGAVG
EFFSGTIAPG FRDALFAREH ADMLDSRVHL SVADYEEMFE SVAPYAPEDF ESSTSCREGA
SFFLDDITSQ ERHYSAR
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