| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0357 |
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| Symbol | serS |
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| ID | 8709281 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 385411 |
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| End bp | 386697 |
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| Gene Length | 1287 bp |
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| Protein Length | 428 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 646482473 |
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| Product | serine--tRNA ligase |
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| Protein accession | YP_003373608 |
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| Protein GI | 283782854 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0172] Seryl-tRNA synthetase |
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| TIGRFAM ID | [TIGR00414] seryl-tRNA synthetase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTTGATA TCCAATTTAT TCGTGAACAT GCCGACGTAG TTAAGGAATC GCAGCGCAAG
CGCGGTGAAT CCGTTGAGCT CGTCGATGAA GTATTGCGCA GCGATGATTT GCGCCGAACC
GCTCTTAAGG CTTTTGAAGA AGCTCGCGCC GAGCAAAAAG CTATTGGTAA GAAGGTTGCA
ACAGCTAGCG CGGAGGAAAA GGCTGCGCTT ATTGCCGAAA CTAAAGAATT AGCTTCGAAA
GTTGCGGAAT ACAAAGCTGA ATCCGAAAAA GCTACTGCCG ACTACACTAC GGCAATGTGG
AAGCTTTCTA ACATCGTTGA AGATGAAGCT CCAGAAGGCG GAGAAGACGA CTATGTTGTA
GTTAAGAAGG TTGGTACGCC TCGCGATTTT GCAGCTGAAG GTTTTGAGCC AAAGGATCAT
TTGACTCTTG GAACTGGTGT TGCTGGAATT GATATGCGTC GTGGCGTGAA GGTTGCAGGC
TCTCGCTTCT ACTTCTTGCG CGGTGCTGTG GCTCGCTTGC AAATCGCAAT GCTTACTATG
GCTGTTGATC AAGCCGAAGA GCACGGTTTT ACGCTTGCGA TTACGCCAAC GCTTGTTCGC
CCAGAAGTAA TGCGCGGAAC TGGCTTCTTG AATTCTCATG CGGACGAGAT TTACCGTTTG
CGCGAACCAG ATGATCAGTA TTTGGTCGGT ACTTCCGAGG TTGCTTTGGC TGGCATGCAT
GAGGATGAGA TTCTTGACTT AAGCAATGGT GCTTTGCGTT ATTGCGGTTG GTCGAGCTGC
TACCGTCGTG AAGCTGGTGC TGCTGGAAAG GATACTTCTG GTATTATTCG TGTGCATCAG
TTCGATAAGG TTGAGATGTT CGTTTATTGC AAGCAGGAAG ATTCTCGCGC TGAGCATCAA
AAGTTGCTCG GTATGGAGCA GGAAATGCTT GCTAAGGTGG AAGTGCCTTA CCGCATTATT
GATACTGCTG CAGGTGACCT TGGTTCTTCT GCCGCTCGTA AGTTTGATTG TGAAGCTTGG
GTTCCAACGC AAGGACGTTA CCGTGAGCTT ACTTCTACTT CTAACTGCAC TGAGTATCAG
GCTCGCCGAT TGAATGTGCG CGAACGTATG GAAGATGGCG GAACTCGCTC AGTTAGTACG
CTTAACGGCA CTTTGGCTAC TACTCGCTGG CTTGTGGCTA TTTTGGAAAA TCATCAGCAT
GAAGATGGTT CGATTGATAT TCCAAAGGCA ATGCAGGCTT ATATGGGTGG CAAGGAAGTC
ATTGAGCCAA CTAAGTGGGA AGCGTGA
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| Protein sequence | MLDIQFIREH ADVVKESQRK RGESVELVDE VLRSDDLRRT ALKAFEEARA EQKAIGKKVA
TASAEEKAAL IAETKELASK VAEYKAESEK ATADYTTAMW KLSNIVEDEA PEGGEDDYVV
VKKVGTPRDF AAEGFEPKDH LTLGTGVAGI DMRRGVKVAG SRFYFLRGAV ARLQIAMLTM
AVDQAEEHGF TLAITPTLVR PEVMRGTGFL NSHADEIYRL REPDDQYLVG TSEVALAGMH
EDEILDLSNG ALRYCGWSSC YRREAGAAGK DTSGIIRVHQ FDKVEMFVYC KQEDSRAEHQ
KLLGMEQEML AKVEVPYRII DTAAGDLGSS AARKFDCEAW VPTQGRYREL TSTSNCTEYQ
ARRLNVRERM EDGGTRSVST LNGTLATTRW LVAILENHQH EDGSIDIPKA MQAYMGGKEV
IEPTKWEA
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