| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0354 |
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| Symbol | |
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| ID | 8709121 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 382036 |
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| End bp | 383664 |
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| Gene Length | 1629 bp |
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| Protein Length | 542 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 646482470 |
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| Product | drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family protein |
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| Protein accession | YP_003373605 |
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| Protein GI | 283782851 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTAAGA ACAAAAAAGG ATGTTTTATT TTGACGCACT CAACATGGCT GTCTAATAAA
AGCCAAGATC TCAGTCATGC ATTAACAGGC GAAGAAGCAT ACAATAACAA TCGTCTTACA
CGTCCTGCTT TAATTTCTCT CGCTATTCTT ACGTTTATTA CATTTATCGG CAATTTCGCA
CAATTACAAC TTACTGCAGC ATTGCCAACA ATAGTTCAAG AATTTGGTAT AAGCGTCACA
ACTGGTCAGT GGCTTACTTC TATTTTCCAG CTGATTATGG CAATTATGGT TCCACTTACA
GCATTTTTAA CAAGACGCTT TTCTACTCGC CAAATTGTTA TTACTTCCAT GTCGCTTTTT
ACTTTTGGAT CTGTACTTGC ATGGCTTAGT AACGACTTTA TGATGGCACT TGTTGGTCGA
ACTCTTGAAG CTATTGGCAC TGGCGTAATG TGGCCTGTTT TACAAATTAC CGTATTCTCC
GTCTACCCTG TTACTCGCAG AGGTATGGCA ATGGGAAGCG TTGGCATGGC TATGAGTATT
GCTCCAGCAA TCGGTCCTAC TATTGGCGGT TTGCAAACTG ATATTAATGG ATGGCGTTCT
ATTTTCTGCT CTCTTACTAT TATCGGAGCA ATATCCGTCG TTTTGGCAGT ATTTTTCTTG
CATAATTTTG GAGAACACGA TCTTAACGCG CATGCTGATT TCTTCTCGGT TGGCCTTTCG
GTTATTGGCT TCGGCGGGCT CATGTTTGGA TTCACTAATA TTGAAGGATG CGGAATTTCA
CACCCATTAT CTTGGGCTCC TATGATTATT GGCGCTTGTG GAATTGCTTG GTTTGTTACA
AGGCAGTTGC GAGCGCAAAA ACGCGGTCAC ACTCCTCTTC TTGGTCTTAA TGTGCTTAAA
AACCGCTACT TTATGGTAGG TACTATTTGC GCTTGCCTTA CATTTTTTGC TTTCAGCTCA
ATTATGGTAC TTATTCCGCT TTATATTCAG TCTGATCGTG GTTTTTCAGC AACTATGAGC
GGCTTAATTC TGCTTCCTGG AGCGTTCGGC ATGGCTATTT CGCAGTATTT TGGTGGTCGT
ATGCTAGATC GCTTTGGAGT GCGCCCAGTT GCTATGGCAG GCTCTATTAT TCTGTTTTTT
GGCACTGTAA TGATGAGTCT TATTGACATG GATACGTGGA TTTGGTGGAT TTCCATTTGG
CAGTTTACTC GCCAAATTGG CATGGGATTC TTGCTTATGC CAATAACTAC GTGGTCGCTT
AATTGTTTGC GTAAGGAAGA ACTTGGCGAT GGTTCGGCTG TAACTAATAC TATGCGTCAG
CTTTGGGGAG CTATTGGAGC ACCTGTTTTA GTAGTTACAA TGACAGTATT GACAACTCTT
CACCATTCTG GCACAGGTCA CGCTGCCGAT GTTGCTGCTA GTATTTTCGG AGTTCAATGG
ACTTTGCGCA TTAGTGCTAT TATTACAGGA ATTATGGCTC TTATCGTTAT TTTTGGAGTC
AAGGGCGAAG GCACGGGTTC TGCTCACAAT CTTGCGCGTA GAGCTATTGA TCGCATGCGC
GTGTTGCATA TTCCTCATTC AGCAGAGCAT CACGACGTAA TGCACGATCA CACTCATAAT
CATTACTAA
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| Protein sequence | MFKNKKGCFI LTHSTWLSNK SQDLSHALTG EEAYNNNRLT RPALISLAIL TFITFIGNFA
QLQLTAALPT IVQEFGISVT TGQWLTSIFQ LIMAIMVPLT AFLTRRFSTR QIVITSMSLF
TFGSVLAWLS NDFMMALVGR TLEAIGTGVM WPVLQITVFS VYPVTRRGMA MGSVGMAMSI
APAIGPTIGG LQTDINGWRS IFCSLTIIGA ISVVLAVFFL HNFGEHDLNA HADFFSVGLS
VIGFGGLMFG FTNIEGCGIS HPLSWAPMII GACGIAWFVT RQLRAQKRGH TPLLGLNVLK
NRYFMVGTIC ACLTFFAFSS IMVLIPLYIQ SDRGFSATMS GLILLPGAFG MAISQYFGGR
MLDRFGVRPV AMAGSIILFF GTVMMSLIDM DTWIWWISIW QFTRQIGMGF LLMPITTWSL
NCLRKEELGD GSAVTNTMRQ LWGAIGAPVL VVTMTVLTTL HHSGTGHAAD VAASIFGVQW
TLRISAIITG IMALIVIFGV KGEGTGSAHN LARRAIDRMR VLHIPHSAEH HDVMHDHTHN
HY
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