| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0351 |
|---|
| Symbol | |
|---|
| ID | 8709794 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Gardnerella vaginalis 409-05 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013721 |
|---|
| Strand | + |
|---|
| Start bp | 377270 |
|---|
| End bp | 378373 |
|---|
| Gene Length | 1104 bp |
|---|
| Protein Length | 367 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 646482467 |
|---|
| Product | transcriptional regulator, LacI family |
|---|
| Protein accession | YP_003373602 |
|---|
| Protein GI | 283782848 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1609] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGAAA ATGAAGCAAA ACGCGTGTCA ATGATCGATG TTGCGCATGC TGCTGGCGTA
AGTCATCAAA CTGTTTCTCG CGTTATTAAT AATTCTCCTG ATGTTTCTGC TAACACGCGA
ATTAAAGTTC TGCGAGTTAT TGAGCAACTT GGGTATTATC CAAGTAATTC AGCGCGCGCA
TTAGCGACTA AGAGGTCGCG TACTTTAGGG CTTATCGTTG GTGCAGAAAA TAGAACATCT
CGAAACATTA TTGCTCCTAT AGAAGCGCAA GCAAAATCTC GTGGTCTTTT TCTTTCTATT
AGCATGGTCA ACGAAACGTT ATGTGAACAA AGTGATATTC AAGATTTATG CGAGAGTTTT
GAAGAGCAAA ATGTCGACGG ATTAATAATT GACGCTCCAA CAGACGCAAT ATTTACGTCA
CTGTGTCGTA CGCGTATTCT TAAGCCGTGC GTATGTGTTA CTGCTACTCA TGGTGCAATA
AGCGCGCATG AAGGCATGAA TATGTTGCGT TCTCATAGCA ACGTTGAGTA TTCAATGATT
GGGATTAATC AATCTCGCGC AATGAACGAT ATTGTGTCAC TTATTGCGCA TTATGGACAT
CGAAATGCCA TTTATATAGC AGGTCCTTCA CAATGGAGAG GTGCTGCAAC GCGACTCATT
GCATGGCGTT CACTTTCAAC TGCTCAAGGT ATTCATTCGC ATATTGTGCA ATGTACTTCG
TGGAAGTCTT CTGAAAGTTA CGCGCGAATG AATCATATGA TTGAGAAATT TGGTATAGAT
GGCATTGCAT TGCCGACTGT TATTGTTGCT TCAAGCGATG AGCAGGCAGT AGGAGTTGTG
CGTTCCTTGT ATGAGCACGG TTTGAAAATT CCGAGTGATA TTAGTGTTGT TGGTTTCGGC
GATATTCCGG CAATAAGTGA TTTTTTCCCA CCTCTTACAA CTGTGAGTCT CGATATGCAG
CAATTAGGGT CGTTGGCAGT GCGTGAAGCT TTGAGATTAA TGAATCATGG GCCTGAACCA
GCATTCCCAG ATATGTCTCA TGGAGTTGGA CAAATACCTG CTAGCTTAAA ATTGCGTTCT
TCTATTGGTG CAGTATTGAG ATAA
|
|---|
| Protein sequence | MAENEAKRVS MIDVAHAAGV SHQTVSRVIN NSPDVSANTR IKVLRVIEQL GYYPSNSARA
LATKRSRTLG LIVGAENRTS RNIIAPIEAQ AKSRGLFLSI SMVNETLCEQ SDIQDLCESF
EEQNVDGLII DAPTDAIFTS LCRTRILKPC VCVTATHGAI SAHEGMNMLR SHSNVEYSMI
GINQSRAMND IVSLIAHYGH RNAIYIAGPS QWRGAATRLI AWRSLSTAQG IHSHIVQCTS
WKSSESYARM NHMIEKFGID GIALPTVIVA SSDEQAVGVV RSLYEHGLKI PSDISVVGFG
DIPAISDFFP PLTTVSLDMQ QLGSLAVREA LRLMNHGPEP AFPDMSHGVG QIPASLKLRS
SIGAVLR
|
|---|
| |