| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0349 |
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| Symbol | lepB |
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| ID | 8709816 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 375590 |
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| End bp | 376378 |
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| Gene Length | 789 bp |
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| Protein Length | 262 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 646482465 |
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| Product | signal peptidase I |
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| Protein accession | YP_003373600 |
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| Protein GI | 283782846 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0681] Signal peptidase I |
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| TIGRFAM ID | [TIGR02227] signal peptidase I, bacterial type |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACTGATG ACACGCAAAT TAGCGATACT CATATCGTTT CAGTAGCGGG TCATGGTATA
GATCCTTCAC CGGTTCCGCC AGAGCCGGAA GGAGATTTAC CTTCCGGCTC TCGCATGTTT
AAGCGCAAAA ATAGAAAAGG TAAGCATTTT GCACATTCTA AGCGTGCTAA AAATGACCGC
CTAACTTTGC GCGATGCTAT AACATGGTTC GGTATTCCAG TATTAGTAGT GATACTTATT
CGTGTGTTCC TATTTGGAGC TTACACAATT CCTTCTGGCT CTATGCTAGA TACTATTCAT
ATTGGCGATT ATGTTATTAC GACTAAGCTA ACTCCGCGCT TATTCCCATT AAAGCGTGGA
GATATTGTTG TTTTTGAGGA TCCTGCACAT TGGTTGAGTG GTGAAAATTC TTCCGGTGTT
GTTGGCAAGG ATTTAATTAA GCGTCTTATT GGTTTGCCTG GGGATACTGT TGAGTGTAAA
GGCGCTGGGC AGCCTATTGT TGTAAACGGT GTTCCAATAC GAGAATCTTC CTATATTCGT
CCTGGTGTTG ACCCGAGTGC TTTTCCGTTT AAAGTAAAAG TTAAAGCTGG TCACGTGTTT
GTTTTGGGCG ATAATCGTTC TAATTCTGCG GATTCACGAT ATCATCGCAA TGATGGCGAT
GATGGCTTAG TTCCGATTTC CAAAATCGAG GGCGTTGCTG TGTTTAGATC GTGGCCGCTT
GATCGAATTG GTCTTTTAGA CGAACACCAT GATGATTTTA AAGATGTGCC TGATCGTCCT
GCAAAATAA
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| Protein sequence | MTDDTQISDT HIVSVAGHGI DPSPVPPEPE GDLPSGSRMF KRKNRKGKHF AHSKRAKNDR
LTLRDAITWF GIPVLVVILI RVFLFGAYTI PSGSMLDTIH IGDYVITTKL TPRLFPLKRG
DIVVFEDPAH WLSGENSSGV VGKDLIKRLI GLPGDTVECK GAGQPIVVNG VPIRESSYIR
PGVDPSAFPF KVKVKAGHVF VLGDNRSNSA DSRYHRNDGD DGLVPISKIE GVAVFRSWPL
DRIGLLDEHH DDFKDVPDRP AK
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