| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0323 |
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| Symbol | trmD |
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| ID | 8708806 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 351785 |
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| End bp | 352651 |
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| Gene Length | 867 bp |
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| Protein Length | 288 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 646482440 |
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| Product | tRNA (guanine-N(1)-)-methyltransferase |
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| Protein accession | YP_003373577 |
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| Protein GI | 283782823 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0336] tRNA-(guanine-N1)-methyltransferase |
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| TIGRFAM ID | [TIGR00088] tRNA (guanine-N1)-methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.910457 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACATCG ATATTATTTC CGTATTCCCA GAATATTTTC GCATGCTAGA CCTAAGTTTG
TTAGGCAAAG CGCAAAATAA TGGCTTGTTG CAAATTCGCG CATACAATTT ACGCAAATGG
ACTCACGATG TACATCAATC GGTTGATGAC ACGCCGGTTG GCGGTGGCGC CGGCATGGTT
ATGAAGCCTG AAGTTTGGGC GGAATGCTTA GACGAGCTGC TTAACTTGCC AAAATCTGAA
GTAAAAAATA CGTGCGATAC GTGCGATAGT TGCGAAGAAG CAAAAATCGC GACTAATAAA
ATAGACTCAA CTAAACCAAT TCTTATATTC CCGAACCCTT CTGCCCCACT ATTTACGCAA
AAAGACGCAA CGGAATTAAG CAACGCAAAT CATTTGGTAT TTGGATGCGG CAGATACGAA
GGCTACGACG CTAGGATTCC AGAATATTAC CGCGCGCAAG GAATTGACGT ACGCGAGTAT
TCAATTGGCG ATTACGTGCT AAATGGCGGA GAAGTTGCAG TAAGCGTTAT GCTTGAGGCA
ATTACACGCT TAATCCCTGG GTTTATGGGA AATCCTGAGT CGATTGTTGA AGAGTCGTAC
ACAGGATCGG ACGCACTCTT GGAACACCAT CAATACACGC GTCCAACTAC TTGGCGAGGT
ATAAGCGTTC CGGAAATACT CACTTCCGGA AATCACGCCA AAGTTGATCG TTTTCGTCGA
GATGAAGCTA TATCTCGCAC AAGCGAAATT CGACCTGATT TGATTGAAAA ATTGGACTGC
CACAAGATAG ATAAAGCGGA TCGAAAAACG CTTATGTCGC TCGGATGGGA AGTTTCTGGC
GATCATCCGC GCAAAAACTC GCGCTAG
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| Protein sequence | MDIDIISVFP EYFRMLDLSL LGKAQNNGLL QIRAYNLRKW THDVHQSVDD TPVGGGAGMV
MKPEVWAECL DELLNLPKSE VKNTCDTCDS CEEAKIATNK IDSTKPILIF PNPSAPLFTQ
KDATELSNAN HLVFGCGRYE GYDARIPEYY RAQGIDVREY SIGDYVLNGG EVAVSVMLEA
ITRLIPGFMG NPESIVEESY TGSDALLEHH QYTRPTTWRG ISVPEILTSG NHAKVDRFRR
DEAISRTSEI RPDLIEKLDC HKIDKADRKT LMSLGWEVSG DHPRKNSR
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