| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0320 |
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| Symbol | |
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| ID | 8709932 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 348806 |
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| End bp | 350230 |
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| Gene Length | 1425 bp |
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| Protein Length | 474 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 646482437 |
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| Product | transporter, major facilitator family protein |
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| Protein accession | YP_003373574 |
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| Protein GI | 283782820 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.196123 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGAAG TTTCATCTCC AACGCCTTCC ATGCTAGACA AGGGTGGGCG ATCAATTGTT
GCGCTAATGA CGGCGCTACT CGTTGCTATT TTTGCTTTCC AGCTCAACGC TTCAATGCTT
TCTCCAGCAT TAGCAACAAT GACAAAAGAG CTTCACGCAA CCGATACGCA AATCGGCTTA
ACTCAAACAG TGTTCTTTAC TGCTGCTGCT TTATTCTCAC TGTTTTTGCC GCGTTTATCT
GATTTAGTCG GTCGTAAGAA GGTGCTTATT GGCATTTTGA TTTCAACGAT TGCGGGCTGC
GTAGTGTCTG CGCTTGCTCC AGATGTGAAT ATTTTGATGC TTGGACGTAT TTTGCAGGGT
GCTTCTGGTC CTGTAGTGCC GATGTGCTTG ATTATGCTTC GCGTGCGCGT AACTGAAGAA
AAGCGTTACG CAAAGCTAAT GGCAATTTTG ACATCTGTAA ACGGTGGTAT TGCTGGCGTT
GATGCGTTGC TTGGCGGTTG GCTTGCTGGA AAGTTTGGTT TCCGTTCGGT GTTCTGGACT
ATGGCAGGTA TTGCTGTAGC GGCAGTGATT ATGGTGATTG TTGCTGCTGA AGAATCTTAT
GCGGAGGAAA CTTCAAAGAT GGATTGGTTG GGCGTTGTGA CGCTTGGTAT TGCGTTCCTT
GCAGCATATC TTGCTATTAA TGAAATTGAT AAGCTTGCAA ATGCTAACTT GACTATGGTT
GCAGGCCTTG TGGTAGTGGC TGTAATCTTC TTCGCGATTT TCTGGAGAAT TGAAGGAAAG
ATTGCTGCTC CTTTGGTTTC GACGCATTAC ATGAAGCAGC GTCGCACGTG GGGCTTGCTT
TCTTGCACGC TGCTTACCAT GACTGGCGTT TTTGCTTTGA TGAATGGTGT AGTGCCGCAG
CTTGCTCAGG ATGCTAAGTT TGGTGCTGGC TTGGGTGCTG ACGTGGTGAG CTTTGCAACG
TTGACGCCTT ACGCAATTAT TGGCTTCTTG TTTGGGCCTG TGGCTGGTAT GCTGGCTGCC
AAGTTTGGTT ACCGTTTGGT ACTTCGTGCT GGCATTATTG TCAGTGTGAT TGGCGTTGTG
TTTGGTATGT ATGTTGCTAA TAATCCATCG GTGTGGTCTT TGGTTGCGCT TTCGCTGGCT
TTGGGCGTAA GCTACGCAGG TGTTGCAAAC ATTATGCTTA ACGGACTTGG TATTGTGCTT
TCTCCAAAGG ATAATCCAGG ATACTTGCCA GGCATGAACG CTGGTGCTTT TAACTTGGGT
GCTGGCTTAA GCTTCGCAAT CCTGTACGCT GTGATGACGA ATGTTGCAGG AACTAATGGT
GCAACAGGCG GATACATGGC TTCGATGGTT GCGGGCATTG TGTTGCTTGC GCTTGCGTTT
GCTTGCTCCT TCTTAATCCC GAATCCTGAA GAAGTAAATA AGTAA
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| Protein sequence | MTEVSSPTPS MLDKGGRSIV ALMTALLVAI FAFQLNASML SPALATMTKE LHATDTQIGL
TQTVFFTAAA LFSLFLPRLS DLVGRKKVLI GILISTIAGC VVSALAPDVN ILMLGRILQG
ASGPVVPMCL IMLRVRVTEE KRYAKLMAIL TSVNGGIAGV DALLGGWLAG KFGFRSVFWT
MAGIAVAAVI MVIVAAEESY AEETSKMDWL GVVTLGIAFL AAYLAINEID KLANANLTMV
AGLVVVAVIF FAIFWRIEGK IAAPLVSTHY MKQRRTWGLL SCTLLTMTGV FALMNGVVPQ
LAQDAKFGAG LGADVVSFAT LTPYAIIGFL FGPVAGMLAA KFGYRLVLRA GIIVSVIGVV
FGMYVANNPS VWSLVALSLA LGVSYAGVAN IMLNGLGIVL SPKDNPGYLP GMNAGAFNLG
AGLSFAILYA VMTNVAGTNG ATGGYMASMV AGIVLLALAF ACSFLIPNPE EVNK
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