| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0316 |
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| Symbol | |
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| ID | 8709514 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 343612 |
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| End bp | 345990 |
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| Gene Length | 2379 bp |
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| Protein Length | 792 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 646482433 |
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| Product | putative ATP-dependent DNA helicase RecG |
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| Protein accession | YP_003373570 |
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| Protein GI | 283782816 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1200] RecG-like helicase |
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| TIGRFAM ID | [TIGR00643] ATP-dependent DNA helicase RecG |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.151323 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCATACTT CGCTTTGTGC AATAATCAGC AATAAGCGAC GCGTTTCTGC ATTAAAATCT
TTGGGCATAG TCACAGTCGA AGACGCGCTA ACTTACTACC CATTTAGAGT CACAAGTCCA
CTGAGAATTG CGAACTTAAA AGATGTAAAA ATTGGCGAAG AAGTGGCTTT CTATGCGCAA
GTTCAGTCAA TTAACGTTGT GCCTATGAAC GCTCGTCGCG GTTTTAGAAT CGAAATTAAC
GTTTTGCAAG ATATGCAAGT GGTAGCTCAG CTTATTTATT TTTCTAAAAA TCGTCAATAC
GCTCAGTGGC TTTCCGCAAA GATGCATGTT GGCGAAATGG TTGTTGTTGG CGGCATGTCT
AGCGCTTTTA ATGGTAAATT GCAATTTACG CATCCTCAAA TTCTTACTGT ATCTGCTGCA
GAAGAAAGCG ATAGCTTGCA TCAATCTCGC GATACTGTAA GAAGCGTGGA AGATGGTTTG
GTGCGTATGA GCGCTCCTAT GCCCGTGTAT CATGCAAATT CGCGAATCTC TAGTGAGCAT
ATTCACGAAA CAATACTTTC TATGCTGTCT GCACTTTCTG AAGATTCTGC ATCTTCCGCA
GCTTCTGCAT CTTCCGCAGC TTCCGCATCT TCCGCAGCTT GCGCTACTGA ATCCCTGCAA
ATCCCAAATA TTACGCCTGA ATCAGTGCTA AAAAAACGTA ACCTCATGAC TAGAGCGTCA
GCAATATACT CAATTCATAA TCCGCAATCA GTTGACGAAT TTTATAAAGC TGTTGACTCG
TTGCGCTATG AAGAAGCTTT TATTTCCCAA GTAGCTGTAT TGCGATCTCG TGAAGATTCT
AAAGATAATC AAGCAAAATC TTGTAATAAT TCTCTTATAA GAAATGAATT TGTGGAAAGT
TTGCCGTTTG AGCTTACTGC AGGTCAAAAA GATGTAATTG ATGAGATTGT ACGTGACATG
CGTGAGCACC ATCCGATGCG TCGCTTGCTT CAAGGTGAAG TTGGTTCCGG AAAAACAGTT
GTTGCGCTCG CTGCAATGCT CGAGGCAGTT GGATCAGGCT ATCAGGCTGT GCTTGTGGCT
CCTACTCAAG TTCTGGCGTC TCAACATGCC GAAAATTTGC GCCAAATGAT TACGCGCGCG
AATCTAAAAG TGCCTGTAAT CGTCGTAACT GGAGGCATGA GACTTGCGGA TCGCAGACGT
GCGCTAGCGA GTGTGGCAAG TGGAGAGCCT TCGCTTATTG TTGCAACTCA TGCAGCGTTC
TCATCGACTT TTAAGCCGAC TAATTTAGCT TTGGTAATTA TTGACGAGCA ACATCGTTTT
GGTGTTGAGC AGCGCGATGT TTTGTTGCGC AAAATGAGCG TAGATTCGCA TAATAGTGCT
GAAAAGTCTT TTACACCGCA TCTTTTAGTA ATGACTGCAA CGCCTATTCC GCGCTCTGCT
GCTATGACGT GGTTCGGTGA TTTGGATGCT TCGTATTTAA CTGAATTGCC TGGAGGTAGA
AAACCTATTC GCACTTTTGT TGTGCAAGAA TCGGATGCGA ATACTATGGC GAGAATGTTT
GCGCATATTC GTGCTCGCAT TGATGCAGGT GAGCGTGCGT ATGTTGTTTG CGCGCATATT
GATGATGATT TTAATGAGGA TTCTGGTAGT GCTTCTGCTA GTAATTTTGG TAGGGATTTT
GATAGCGATG AATCTGAAGC TTTTGAAGAT GTTTCGCAAT CTGTGCAATC TAATCAATCT
GAAGAAAATA ACGCAGATTC TTTGCGCAAA CTTCATACAG TTAACGGCAT TTTGAAGCGG
CTTTCAGCTT TGCCGCAATT TAAAGGCGTT ACTTTTGCTA AGCTTACTGG TCGCGACGAT
GATGCTACGA AACGCGAAAC GATGGAACGT TTTGCGCGCG GAGATGTGCA AGTTCTTGTA
GCTACAACGG TTATTGAGGT CGGTGTTGAT GTGCCTCAAG CGAGTTGCAT TGTGATTTTT
GACGCGGATC GTTTTGGCCT TGCGCAATTG CATCAGTTGC GTGGACGTGT TGGGCGTGGT
GGCACGAATT CTTGGGCATT TTTGGTTGCG CAAACTGAGG ATGGAAGTCT TGCTCAAGAA
CGTTTGCAAG TTGTTGAAAA TTCGCTAGAT GGTGCCGTAA TTGCTAAGAA AGATTTGGAA
TTGCGCAATG TTGGTGATGT TCTTGGCGAT AAGCAGTCGG GTGGTCGCTC GAGTTTGAAG
ATTTTGCGAG TTGTTAAGGA TGTGAAGATT ATCGCTATGG CTCGTGAAGA TGCGTTGGAG
ACTTTGCAAA AAGACACTCA TCTTGTTTTG TTGCCGTATC TTGCAGGTGC AGTGCTTGAT
TTTACGAGAG GCGGAAGTAC GCAAATCGTA AGCAATTAA
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| Protein sequence | MHTSLCAIIS NKRRVSALKS LGIVTVEDAL TYYPFRVTSP LRIANLKDVK IGEEVAFYAQ
VQSINVVPMN ARRGFRIEIN VLQDMQVVAQ LIYFSKNRQY AQWLSAKMHV GEMVVVGGMS
SAFNGKLQFT HPQILTVSAA EESDSLHQSR DTVRSVEDGL VRMSAPMPVY HANSRISSEH
IHETILSMLS ALSEDSASSA ASASSAASAS SAACATESLQ IPNITPESVL KKRNLMTRAS
AIYSIHNPQS VDEFYKAVDS LRYEEAFISQ VAVLRSREDS KDNQAKSCNN SLIRNEFVES
LPFELTAGQK DVIDEIVRDM REHHPMRRLL QGEVGSGKTV VALAAMLEAV GSGYQAVLVA
PTQVLASQHA ENLRQMITRA NLKVPVIVVT GGMRLADRRR ALASVASGEP SLIVATHAAF
SSTFKPTNLA LVIIDEQHRF GVEQRDVLLR KMSVDSHNSA EKSFTPHLLV MTATPIPRSA
AMTWFGDLDA SYLTELPGGR KPIRTFVVQE SDANTMARMF AHIRARIDAG ERAYVVCAHI
DDDFNEDSGS ASASNFGRDF DSDESEAFED VSQSVQSNQS EENNADSLRK LHTVNGILKR
LSALPQFKGV TFAKLTGRDD DATKRETMER FARGDVQVLV ATTVIEVGVD VPQASCIVIF
DADRFGLAQL HQLRGRVGRG GTNSWAFLVA QTEDGSLAQE RLQVVENSLD GAVIAKKDLE
LRNVGDVLGD KQSGGRSSLK ILRVVKDVKI IAMAREDALE TLQKDTHLVL LPYLAGAVLD
FTRGGSTQIV SN
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