| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0314 |
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| Symbol | fni |
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| ID | 8708789 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 340798 |
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| End bp | 343137 |
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| Gene Length | 2340 bp |
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| Protein Length | 779 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 646482431 |
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| Product | isopentenyl-diphosphate delta-isomerase, type 2 |
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| Protein accession | YP_003373568 |
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| Protein GI | 283782814 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1304] L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases |
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| TIGRFAM ID | [TIGR01220] phosphomevalonate kinase, ERG8-type, Gram-positive branch
[TIGR02151] isopentenyl-diphosphate delta-isomerase, type 2 |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.0544804 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTCAAG TGCGCTCTAG TGCCCCAGGA AAGCTTTATA TTGCTGGCGA GTATGCTGTT
GTTGACGGCT GTGCTGCAAT TGTTGCTGCT GTTAGTCGTT ATGTAACAGT TAGCATAAGT
GATGAAACCT TAAACGAAGA GTTACGCGAA AATTTGCAGA AAAATGCCCC TAGTAGCAGA
AATTATTGTG GTGCAATTAC GTCAGATGCT GAAAAATATA AACCGCTTCT TTGGGCGCGT
GCATCCGACG GAAGTATTGA AATACAAAAC GACGGAAAAT ATGCTTATGT GCTCGCTGCA
ATGGGCGTAG TCGACGCTTA TGCTAGTGAG AAATGTGCGC CAAATATTAA CCGCAAAAGT
TACAATGTGC ATATTTCTAG CGAACTTGAT GATGCAAAAA CTGGTAGAAA ATACGGTCTT
GGATCTTCTG CTGCAGTAAC TGTTGCAGTT ATTCGCGCGT TGTGCAAATG GTATGGTTTG
AATCTTTCGA CTCCAGAAAT TTGCAAGCTA GCGTTGATTG CGTCGTCGAG TGTTAAAAAA
TCCGGAAGCG GTGGAGATGT TGCTGCCAGC TCTTATGGCG GTTGGACTAT GTATCGCGCG
TATAGCCGAG AGTGGCTTGA AGCTGAGCTG ACGCTAGTAA AATCCGGATG CTCTGATTTC
GGTGAGTTGT TGCACAAAAA GTGGCCACGA CTGGAAGTTA AGCGTTTAAA TGTAGATAAG
TCGCTAAAAC TTTTAGTCGG GTGGACTGGT TCTCCTGCGT CTAGCGCAAA GCTAGTAAGT
AGCGTAGAAA GTAGCGTTAA AACTAGTGCT GAAGGTAGTA CGGAAAGTAG CGTCGAAACT
AGTGCTTTTG ACAATAAAAA TCAACTTTTT ACTTACGAAG ATTTTTGCAA ACAAAGTGAG
ATTTGCGTGC AAAAACTTGC GCGCGCAATT GAAAAGTTTG AAATAAGCGA AATTTCTAGC
GGTTTTGCTC AAAATCGTGC GTTGTTACAA AAATTAAGTG CTCTTACTGG AACTGTTATC
GAAACGCATG AACTTACAAA ATTTATTGAA ATTGCGACTT GTGCCGGTGT TCCTGCAAAA
ACTAGCGGCG CAGGCGGGGG AGATTGTGCA ATTGCGCTGT CGACAATTTA TGACAATAAT
GTAATTGAAA CTATGAAATC TACTTGGGAA GCCAATGGAA TAAAGCCATT GAATATTGAT
GTTACGGAAA TTTTTGGAAC TGGTAAGCCT TCTGAAAATA TTGTATTAGA CGCGTTTGTT
AAGAGTCGCG AACCTAATGC ACAATCTGCT CAATCTTGCA CAATACAAAA CCGCAAAGAC
GCGCATATTG CGCTTGCGGA CAAGCAGTAT AAAACTCGTG CAGATTCAGA TTTTGACAAA
GTGCGTTTTG TGCCGAATGC TTTGCCGCAA GTTGCGCTTG AAGAAATTGA CGATAGCGTG
AGCGTGCTAG GAAGTGAAGT ATGCGATTCT GTGCATTGGT GCTCGCCGAT ATATATTAAC
GCAATGACCG GCGGAAGTGA TGCTGCTAAA AAAGTGAATG CAAGTCTTGC TAGAGTTGCT
GCAAAAAATT CTGTTGCTAT GGCGAGTGGA TCTTTGAGTG CTGCTCTTCG AGACGAAACT
TTACTCAGCA CTTTCAGTGT CATAAGAAGC GAAAATCCAC ATGGATTTGT GATGGCAAAT
GTTAGCGCTG GAACTAGTGC GTCTGATGCA TTGCGTGCTG TAAACATGAT TCATGCGAAT
GCGTTACAAG TGCATTTAAA TGCTGCACAA GAGTTGGTTA TGCAAGAAGG CGATCGCGAT
TTTCGAAATT GGTTGTGCAA TATTGAGTCT ATTGTCAGTG CGTGCGAAGC ACTAAGCGTG
CCTGTGATTG TGAAGGAAAC TGGATGCGGA ATTTCTGCTA AAGATGTTCA TCGTCTTAAA
GATGTTGGAG TGCGCACTGT AGATGTTTCT GGTCGTGGCG GAACTAATTT TGTAACAATA
GAGAATGCTC GCAGGAACTT AGGCGACTGT GATTATTTGG CTGATTGGGG TCTTACTACT
GTTGAGTCGC TGGTTGACAT ACGCAAGTGT GATTCGTTAA AAAATATGGA AGTTTTCGCA
AGTGGAGGAG TTCGCACGCC TTTGGATGTT GTGCGTGCGT TGGCTTTGGG TGCTTCTGCA
GTTGGTGTCG CTGGCGAGTT TTTGCATACG CTTATGCATG AAGGTGAGGA TGCGCTTTCT
TTGCAAATTG ATAACTGGCA GAAGCAAATT AGGGTGATTA TGGCTCTTCT TGGATGCAAG
ACAGTCAAGG ATTTACAAGA AAAGACTGAG TTCGTGCGCG CGGATTGTCT TGGTAAGTGA
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| Protein sequence | MTQVRSSAPG KLYIAGEYAV VDGCAAIVAA VSRYVTVSIS DETLNEELRE NLQKNAPSSR
NYCGAITSDA EKYKPLLWAR ASDGSIEIQN DGKYAYVLAA MGVVDAYASE KCAPNINRKS
YNVHISSELD DAKTGRKYGL GSSAAVTVAV IRALCKWYGL NLSTPEICKL ALIASSSVKK
SGSGGDVAAS SYGGWTMYRA YSREWLEAEL TLVKSGCSDF GELLHKKWPR LEVKRLNVDK
SLKLLVGWTG SPASSAKLVS SVESSVKTSA EGSTESSVET SAFDNKNQLF TYEDFCKQSE
ICVQKLARAI EKFEISEISS GFAQNRALLQ KLSALTGTVI ETHELTKFIE IATCAGVPAK
TSGAGGGDCA IALSTIYDNN VIETMKSTWE ANGIKPLNID VTEIFGTGKP SENIVLDAFV
KSREPNAQSA QSCTIQNRKD AHIALADKQY KTRADSDFDK VRFVPNALPQ VALEEIDDSV
SVLGSEVCDS VHWCSPIYIN AMTGGSDAAK KVNASLARVA AKNSVAMASG SLSAALRDET
LLSTFSVIRS ENPHGFVMAN VSAGTSASDA LRAVNMIHAN ALQVHLNAAQ ELVMQEGDRD
FRNWLCNIES IVSACEALSV PVIVKETGCG ISAKDVHRLK DVGVRTVDVS GRGGTNFVTI
ENARRNLGDC DYLADWGLTT VESLVDIRKC DSLKNMEVFA SGGVRTPLDV VRALALGASA
VGVAGEFLHT LMHEGEDALS LQIDNWQKQI RVIMALLGCK TVKDLQEKTE FVRADCLGK
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