Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_0304 |
Symbol | |
ID | 8709292 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | + |
Start bp | 330028 |
End bp | 332349 |
Gene Length | 2322 bp |
Protein Length | 773 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 646482422 |
Product | transglycosylase |
Protein accession | YP_003373559 |
Protein GI | 283782805 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0744] Membrane carboxypeptidase (penicillin-binding protein) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.201618 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGAAAA AGAATTCACT GACTGTTCGC CGTGTGTTAG CACTGTTCCT TACCTACATC ACTTTGTGTG TTGCAGGAGG TATTGCAGCA AGTATTATGT TTGTTCCTGG CGTAATGAGC GTGAATAGTG TAGTGAAAAC AGTAGTGCCT TCACTTCGCG TTGACGGCAT CGATTTTGAT GTTACCGCGT TGCCGCAAAA ATCGCGACTT TACGCTTCTG ATGGCAAAAC TATTATTGCA ACTTTTTATG CTCAAAATCG CACTGTAGTA CCGCTTCGAC GCATATCGCA ATATATGCAG CGAGCAATGG TTGCTCGTGA AGACCGTCGA TTCTTTGAGC ATTCCGGCGT AGATATGCAA GGTGTTATTC GCGCATTCGT GCAAACATTC GTTAAAAAGG GAGATATGCA AGGTGGCTCT TCCTTAACTC AGCAATATGT AAAAAATGTG CTTATGATTA AAGCTCGCGA AAATAACGAT CCTTTAGCTG AGTATCACGC TTCTGAAGGC ACTATTGCAC GTAAATTACG CGAAATGCTT ATTGCAATTC AAATGGAGAA AAAATACTCT AAACTTGAGA TTTTGCAGGG ATATTTAAAT ATTGCGCAGT TCGGTAGCAA TAATATTTAC GGCGTAGAAA CTGCAGCTCA TCGCTACTTC AATACGAGCG CTGCAAAACT TAATCTTGTG CAATCAGCAA CTATTGCTGC AATTACAAAG AATCCTTCGC GTTATGATCC TTCTATTGAA ACAAATCAGC CTGAAGCGCA AAAGCAGCGC AATATTGTAC TTGATTTAAT GCTTCGTCAA GGTTTTATTA CTAAGAGCGA GCATGATTCC GCTGTTGCTA TTCCTCTTAA AAGCACTCTT AACATACAGA GGGAAGTTTC TAAAATTGGA TGTCAAGCTG CAGGCGACGC AGCATTCTTC TGCGATTATG TGACGAAGAA AATTTTGCAC TCTCGCGAGT TTGGTAAAAC TGCTGCCATG CGCGAAAAGT TGCTTACTGA GGGTGGTCTT GATATTTACA CAACTATGGA TTTGCGTGCT AGTAAGGCTG CTATGAAAGC TGCTAGGGAT ACGATTCCTG TAAATGATAA GAGCGGTTTT GAGGTTTCAA TTGCGGCAAT TAAGCCTGGA ACTGGTGAAG TTTTGGCGTT TGGTAGCAAT CGTATTTATG ATGCTACGGA TGCTGCAAAA TCAGATCCTA CGCATACGGC TTTGAACTAC GCTGTCGATG AACGAGATGG TGGCGGTCTC GGTTGGCAAA TTGGTTCTAC TTGGAAGCCA ATTAATATGG TTGCGTGGAT GCTTGCTGGA AAGTCAATTA ATCAGCCTCT TCGCACTTCT ATGCTTTATA ATAATGCTGA TTTTAATTGC AGCAAATTCC GCGGAGTTGG TAGTTGGTCA GTTCAAAACT CTGGTGGTGG CACAACTAAT CCGGAAACTC CTTTGCAAGG TCTTGTGCGC TCGCATAACA CCACTCAGGC TTCTATGGCT CAGCAAATTA AGCTGTGTTC AATCGCGGAT GCTGCTCGCA TACTTGGCTA CCACAATTCG CCTCTTGGTC AGGAAAGCGT GTATTCTGCT AACTCGCTTA ATCCGCCTAT GACGATTGGT TCTGTGCAAG CTTCGCCTTT AACTGTGGCG AATGTGTATG CAACTATTGG TGCTGATGGC GTGGCATGTG ATCCTATTGC TATTAAGCGA GTTGTTGACA AAAACGGTAA GCGTTTGAAA GTTCCTAGTG CGCATTGCCA TCAAGCAATT CCAAAGGGAA TCGCTCAAAC TGCTGCTTAT GCGCTGAATC AGGGTGTTGT GCAACCTGGC GGCGAGGCTT CAACTACACA ACTTGATGGC GGTCGCAAGA CTTTCGCAAA AACTGGTACT AACGAGCAGT ACTACATGAC TACAGCTGGT TTTGTGCCGT ATCAAGTTGC TTCGTTTGTG GCAGTTGGTA ACGCTGAATC ACAGAAAAGC TTTAATGGCA TGACTATTAA CGGTCGCACA ATGGCAGCTT GGTACGGTAT GTATATTGCA ACCCCAGCGT GGAAACAGTT TATGAACGAC TATTTGAAAG CTGCTAACAT TCCTGTTGAC AACGATTATG GCAAGCCTGA TCCAAAGTAT ACTGCCGGTG GAACTCTGCC CGGCACGCCT AAAAATACTG TTAAAACTGA TCAGCAGAAG CGAGATGAAG ACGCCAGAAA GCAGGCAGCA CAAGAACAGC AGGAAGAAGC TAAGACGCAA AAGAACACGC AAGATCAGTA CGGCACTGCT CGCCGCGACG ACTATGGTGA TTCAGAAACT GATAATTACT AA
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Protein sequence | MSKKNSLTVR RVLALFLTYI TLCVAGGIAA SIMFVPGVMS VNSVVKTVVP SLRVDGIDFD VTALPQKSRL YASDGKTIIA TFYAQNRTVV PLRRISQYMQ RAMVAREDRR FFEHSGVDMQ GVIRAFVQTF VKKGDMQGGS SLTQQYVKNV LMIKARENND PLAEYHASEG TIARKLREML IAIQMEKKYS KLEILQGYLN IAQFGSNNIY GVETAAHRYF NTSAAKLNLV QSATIAAITK NPSRYDPSIE TNQPEAQKQR NIVLDLMLRQ GFITKSEHDS AVAIPLKSTL NIQREVSKIG CQAAGDAAFF CDYVTKKILH SREFGKTAAM REKLLTEGGL DIYTTMDLRA SKAAMKAARD TIPVNDKSGF EVSIAAIKPG TGEVLAFGSN RIYDATDAAK SDPTHTALNY AVDERDGGGL GWQIGSTWKP INMVAWMLAG KSINQPLRTS MLYNNADFNC SKFRGVGSWS VQNSGGGTTN PETPLQGLVR SHNTTQASMA QQIKLCSIAD AARILGYHNS PLGQESVYSA NSLNPPMTIG SVQASPLTVA NVYATIGADG VACDPIAIKR VVDKNGKRLK VPSAHCHQAI PKGIAQTAAY ALNQGVVQPG GEASTTQLDG GRKTFAKTGT NEQYYMTTAG FVPYQVASFV AVGNAESQKS FNGMTINGRT MAAWYGMYIA TPAWKQFMND YLKAANIPVD NDYGKPDPKY TAGGTLPGTP KNTVKTDQQK RDEDARKQAA QEQQEEAKTQ KNTQDQYGTA RRDDYGDSET DNY
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