| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0293 |
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| Symbol | radA |
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| ID | 8709000 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 314677 |
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| End bp | 316164 |
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| Gene Length | 1488 bp |
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| Protein Length | 495 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 646482411 |
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| Product | DNA repair protein RadA |
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| Protein accession | YP_003373548 |
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| Protein GI | 283782794 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1066] Predicted ATP-dependent serine protease |
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| TIGRFAM ID | [TIGR00416] DNA repair protein RadA |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTAGTA AATCTACTCT TCACTATTTA TGTTCCGAAT GCGGTTGGAG CGGCTCAAAA
TGGTACGGTC GCTGCCCTGA ATGTGGCGAA TGGGGCACAG TGAACGAGTT TAGAGAGGCA
CGAGTTAGCG GATTATCTCG TACAACACGT ACACCGCGCG CAACAACAGC ATCGCGCGCA
TATTCACCAG ATAGCATAAC TACTTCTAAT CGCAATATCG CACATTCAAC TCTCGATTCA
GCAACATCCG CGCAACCAAT TAGCGAAATT CAAGCAGACG ACGCAATGCG CATCCATACT
GGTTTTAGCG AATTCGATCG CGTATTAGGC GGAGGACTTG TGCCAGGCTC CGTAACTCTT
ATAGCAGGAG AGCCAGGTAT CGGAAAATCA ACACTACTTC TAAAAGCAGC AGCTTACGTA
TCTAAGCAAT CAAAAGAAAG CAACACTCCC CCTGTATTGT ATATTTCCGG CGAGGAATCA
GCAGCGCAAG TTAAATTGCG CGCGTCTAGA ATTAACGCTG TAAACGATTA TTTATTACTT
GCAACAACAG GCGATCTTGA CACTGTACTA GATCTTATTG AAACGCATCA CCCTACGCTT
GCTATTGTCG ATTCTGCGCA AACGATTTCC GCACAAGAAG TAGATGGTAT TACAGGCGGT
TCTACACAAG TTAGAGAAGT TGCGAGTGCA CTTATCGACG TTGCTAAAGC TAACAATATT
CCGATACTTT TAGTTGGGCA CGTTACAAAA GATGGTTCAA TAGCAGGGCC GCGTACGCTT
GAGCATTTAG TCGACACAGT ATGCCAATTT GAGGGCGACA CACAAACAGC GCTACGCATG
CTAAGAGCTG TAAAGAATCG CTTTGGTCCT ACAGACGAAG TTGGCTGCTT CGACATGAGC
GGTGAAGGAA TTGAGGAAGT GCCGGATCCT TCCGGACTGT TTTTGTCTTC TACAGAAAAC
GCTAATCAAG GTAAAAATGC GCAAGATTGC ACAAACGACG GAACTTGCGT CACTTTTACG
CTTGAAGGAC ACAGAAGCCT GCCGATTGAA ATACAAGCAC TTGTAACGCA ATCAGCTCTG
CCTACTCCTC GCCGCGCAGT TTCTGGTGTT GATTCTAACC GTCTTGCAAT GCTTACAGCA
GTTTTGTATC GTCACGGACG CGTTAATTTG CTTGCAAAAG ATTTGTACGT ATCTACTATT
GCAGGAGCGT TGGCAAAAGA GCCGTCTTGC GACTTAGCAA TCGTAGCAGC TTTAGCTAGC
ACTGCTGCCG GGAAAGCAGT AACTCCTAAA ACTTGCGCAA TTGGTGAAAT GAGCTTAACT
GGTCAAGTTC GCCCAGTGCC AAGAATAGAG CCGCGATTGC GCGAGGCTGC GCGAATAGGA
TATAAGCGCG CAATAGTTTG CCATATGTGG AAAAATGTTA ATATTCCAGG ATTAGAAATT
ATTGAAGTTA GCACAGTGCG AGAAGCGTTG AAAGCACTTG GGCTATAA
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| Protein sequence | MASKSTLHYL CSECGWSGSK WYGRCPECGE WGTVNEFREA RVSGLSRTTR TPRATTASRA
YSPDSITTSN RNIAHSTLDS ATSAQPISEI QADDAMRIHT GFSEFDRVLG GGLVPGSVTL
IAGEPGIGKS TLLLKAAAYV SKQSKESNTP PVLYISGEES AAQVKLRASR INAVNDYLLL
ATTGDLDTVL DLIETHHPTL AIVDSAQTIS AQEVDGITGG STQVREVASA LIDVAKANNI
PILLVGHVTK DGSIAGPRTL EHLVDTVCQF EGDTQTALRM LRAVKNRFGP TDEVGCFDMS
GEGIEEVPDP SGLFLSSTEN ANQGKNAQDC TNDGTCVTFT LEGHRSLPIE IQALVTQSAL
PTPRRAVSGV DSNRLAMLTA VLYRHGRVNL LAKDLYVSTI AGALAKEPSC DLAIVAALAS
TAAGKAVTPK TCAIGEMSLT GQVRPVPRIE PRLREAARIG YKRAIVCHMW KNVNIPGLEI
IEVSTVREAL KALGL
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