| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0278 |
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| Symbol | rplQ |
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| ID | 8708771 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 297842 |
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| End bp | 298276 |
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| Gene Length | 435 bp |
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| Protein Length | 144 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 646482396 |
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| Product | ribosomal protein L17 |
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| Protein accession | YP_003373534 |
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| Protein GI | 283782780 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0203] Ribosomal protein L17 |
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| TIGRFAM ID | [TIGR00059] ribosomal protein L17 |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCCTACAC CGAAACAAGG CCCTCGTCTG GCTTCTAGCC CGGCTCATGA GCGCCTGATG
CTGGCCAATA TGGCGACCAG CCTCTTCCAG CACGGTCGTA TCGTAACGAC GTTGCCAAAG
GCAAAGCGTC TTCGTCCGCT TGCTGAGCGT TTGATTTCGT TCGCTAAGCG TGGCGATTTG
CATTCGCGTC GTCGTGTGTT GCGTGTAATT CGCAACAAGT CCGTGGTTCA CGTGCTTTTC
ACTCAGATTG CTGAGCAGAT GAAGCAGCGT GAAGGTGGTT ACACACGTAT CGTGAAGATT
GCTCCACGTC GTGGTGATAC CGCTCCTCAG GCAATTATTG AGCTCGTAAC TGAGCCAGTA
AGCCCAAAGA AGGCTGTTGT GAAGGAAGCT GAAGCAGCTA CCAAGGTTGC AGCTAAAGAA
GAAGCTGCCG AGTAG
|
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| Protein sequence | MPTPKQGPRL ASSPAHERLM LANMATSLFQ HGRIVTTLPK AKRLRPLAER LISFAKRGDL
HSRRRVLRVI RNKSVVHVLF TQIAEQMKQR EGGYTRIVKI APRRGDTAPQ AIIELVTEPV
SPKKAVVKEA EAATKVAAKE EAAE
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