| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0277 |
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| Symbol | rpoA |
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| ID | 8709620 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 296769 |
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| End bp | 297764 |
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| Gene Length | 996 bp |
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| Protein Length | 331 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 646482395 |
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| Product | DNA-directed RNA polymerase, alpha subunit |
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| Protein accession | YP_003373533 |
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| Protein GI | 283782779 |
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| COG category | [K] Transcription |
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| COG ID | [COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit |
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| TIGRFAM ID | [TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCTTATCG CACAGCGTCC GACACTTACC GAGGAATCAC TGAATCCCCA GCGTTCTCGC
TTTACTATTG AGCCGCTGGA ACCAGGTTTT GGCTACACTC TCGGCAATTC GCTGCGTCGT
ACCTTGTTAA GCTCTATTCC AGGTGCTGCC GTTACTTCGG TTCGCATCTC TGGAGCTTTG
CATGAGTTTA CGACTCTGCC AGGTGTTGAA GAAGATGTCA CTGAAATTCT GCTGAACATC
AAGGGCATCG TGCTCACGAG TGAGTACGAC GAGCCTGTAG TGATGTATTT GCGCAAGAAT
GGTAAAGGTG AGGCCACTGC TGGAGATATT ACTCCTCCAG CCGGTGTTAC TATTGCTAAT
CCTGACTTGC ATATTGCTAC ACTCGCAGAA GATGGTGAAC TTGAAATTGA GTTTACTGTT
GAACGCGGTC GCGGCTACGT GCCAGCTCAG ATGAACAAGC AGGAGAACAG CGAAATCGGC
CGCATTCCTG TGGATTCGAT CTACTCACCA GTTTTGAAGG TGAGCTATAA GGTCGAAGCT
ACCCGCGTGG AACAGCGCAC GGACTTCGAT AAGCTCATCC TGGATGTGGA AACCAAGCCA
GCTATTACAC CGCGTGATGC AGTTGCATCT GCAGGCTCGA CTTTAGTTGA GCTTTTCGGT
CTTTGCCGTG AGCTTAACGT TGATGCTGAA GGTGTTGAAG TTGGTCCAGC GCCAACTCAT
GATGAAGCTG ATTCTCAGTT GGCTATACCG ATTGAAGATA TGAATTTTAC TCAGCGTAGC
TATAATTGCT TGAAACGTGA GGGTATTCAT ACAGTCGGCG AACTGGTAGT TCACACTGAG
CAGGATTTGC TCGATATTCG TAATTTCGGC ATGAAATCCA TCGATGAAGT TAAAGAGAAG
TTGCAGGCAA TGGGTCTGTC TTTGAAGGCT TCACCGATTG GCTTCGACGC CAATAATCTC
GAAGGTGGCA CTTTCTTCTC GCCTGAAGAC GAGTAA
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| Protein sequence | MLIAQRPTLT EESLNPQRSR FTIEPLEPGF GYTLGNSLRR TLLSSIPGAA VTSVRISGAL
HEFTTLPGVE EDVTEILLNI KGIVLTSEYD EPVVMYLRKN GKGEATAGDI TPPAGVTIAN
PDLHIATLAE DGELEIEFTV ERGRGYVPAQ MNKQENSEIG RIPVDSIYSP VLKVSYKVEA
TRVEQRTDFD KLILDVETKP AITPRDAVAS AGSTLVELFG LCRELNVDAE GVEVGPAPTH
DEADSQLAIP IEDMNFTQRS YNCLKREGIH TVGELVVHTE QDLLDIRNFG MKSIDEVKEK
LQAMGLSLKA SPIGFDANNL EGGTFFSPED E
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