| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0275 |
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| Symbol | rpsM |
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| ID | 8709796 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 295830 |
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| End bp | 296207 |
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| Gene Length | 378 bp |
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| Protein Length | 125 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 646482393 |
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| Product | 30S ribosomal protein S13 |
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| Protein accession | YP_003373531 |
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| Protein GI | 283782777 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0099] Ribosomal protein S13 |
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| TIGRFAM ID | [TIGR03631] 30S ribosomal protein S13 |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCACGTC TTGCCGGAGT AGATATTCCC AATGAGAAGC GCATTGAGAT TGCCCTCACC
TACATTTTTG GTGTTGGTCG TACTCGCGCT AAGGAAACGC TTGCCGCGAC CGGTGTTAAT
CCGGACACTC GCGTCAAGGA TCTTACGGAT GAACAGCTGA TCACCTTGCG TGATTATCTT
GAGGCCAATT ACAAGATTGA AGGCGATTTG CGTCGTGAGA TTGACGCTGA CATCCGTCGT
AAGATTCAGA TCAACTGCTA TCAAGGCCAG CGTCATCGCA AGGGTCTTCC TGTGCGTGGT
CAGCGTACTA AGACTAATGC TCGTACTCGC AAGGGTCCGA AGCGTACTGT CGCCGGGAAG
AAGAAGGCCA CCCGATAG
|
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| Protein sequence | MARLAGVDIP NEKRIEIALT YIFGVGRTRA KETLAATGVN PDTRVKDLTD EQLITLRDYL
EANYKIEGDL RREIDADIRR KIQINCYQGQ RHRKGLPVRG QRTKTNARTR KGPKRTVAGK
KKATR
|
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