Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_0256 |
Symbol | rplD |
ID | 8709938 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | + |
Start bp | 284465 |
End bp | 285130 |
Gene Length | 666 bp |
Protein Length | 221 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 646482375 |
Product | ribosomal protein L4/L1 family protein |
Protein accession | YP_003373513 |
Protein GI | 283782759 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0088] Ribosomal protein L4 |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 38 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAAACG TAACTCTGAA CGTCACTGAT ACTAAGGGCA ATGCAAACGG AACCGTTGAA GCTCCTGCTG AAATTTTCGG CATCTCCAAC GAAGACGTTT TAGCTCACGG TCCACTGGTT CATCAGGTCG TAATCGCTCA GCTTGCTGCT GCTCGTCAGG GCACCCATGC TGTGAAGAAT CGTGCTAATG TTTCCGGCGG CGGTAAGAAG CCATGGAAGC AGAAGGGCAC CGGTCGTGCT CGCCAGGGTT CCATTCGTGC TCCTCAGTGG GTACATGGTG GCGTTGTTCA CGGTCCAGTT CCTCGTAAGT ACGATCAGCG CACCCCGAAG AAGATGAAGG CAGCTGCTCT TCGCTACGTT CTTTCGGATC GTGCAAATGC TGGACGTATT GCTGTAGTTG ACTTTGGTAT TAAGGATGTT CCATCCACCA AGACAGCTGT TGCAGCACTT ACTCCTGTGA CCAATAACCA ATTCACTACT GTTGTTCTTT CTCGTGAGAA CATCAATGAG TGGATGTCTG TACGCAACAT TCCAACTGTT CACGTGATCT TCGCTGATCA GCTCAACACT TACGATGTTG TTACAGCTCA GTACGTCGTC TTCTCCAAGG AAGGCTTCGA AGCCTTCGTT GCTGCTAAGA CCGAGCCTGT CGTTAAGGAG GCCTGA
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Protein sequence | MANVTLNVTD TKGNANGTVE APAEIFGISN EDVLAHGPLV HQVVIAQLAA ARQGTHAVKN RANVSGGGKK PWKQKGTGRA RQGSIRAPQW VHGGVVHGPV PRKYDQRTPK KMKAAALRYV LSDRANAGRI AVVDFGIKDV PSTKTAVAAL TPVTNNQFTT VVLSRENINE WMSVRNIPTV HVIFADQLNT YDVVTAQYVV FSKEGFEAFV AAKTEPVVKE A
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