Gene HMPREF0424_0256 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0256 
SymbolrplD 
ID8709938 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand
Start bp284465 
End bp285130 
Gene Length666 bp 
Protein Length221 aa 
Translation table11 
GC content51% 
IMG OID646482375 
Productribosomal protein L4/L1 family protein 
Protein accessionYP_003373513 
Protein GI283782759 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0088] Ribosomal protein L4 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones38 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAAACG TAACTCTGAA CGTCACTGAT ACTAAGGGCA ATGCAAACGG AACCGTTGAA 
GCTCCTGCTG AAATTTTCGG CATCTCCAAC GAAGACGTTT TAGCTCACGG TCCACTGGTT
CATCAGGTCG TAATCGCTCA GCTTGCTGCT GCTCGTCAGG GCACCCATGC TGTGAAGAAT
CGTGCTAATG TTTCCGGCGG CGGTAAGAAG CCATGGAAGC AGAAGGGCAC CGGTCGTGCT
CGCCAGGGTT CCATTCGTGC TCCTCAGTGG GTACATGGTG GCGTTGTTCA CGGTCCAGTT
CCTCGTAAGT ACGATCAGCG CACCCCGAAG AAGATGAAGG CAGCTGCTCT TCGCTACGTT
CTTTCGGATC GTGCAAATGC TGGACGTATT GCTGTAGTTG ACTTTGGTAT TAAGGATGTT
CCATCCACCA AGACAGCTGT TGCAGCACTT ACTCCTGTGA CCAATAACCA ATTCACTACT
GTTGTTCTTT CTCGTGAGAA CATCAATGAG TGGATGTCTG TACGCAACAT TCCAACTGTT
CACGTGATCT TCGCTGATCA GCTCAACACT TACGATGTTG TTACAGCTCA GTACGTCGTC
TTCTCCAAGG AAGGCTTCGA AGCCTTCGTT GCTGCTAAGA CCGAGCCTGT CGTTAAGGAG
GCCTGA
 
Protein sequence
MANVTLNVTD TKGNANGTVE APAEIFGISN EDVLAHGPLV HQVVIAQLAA ARQGTHAVKN 
RANVSGGGKK PWKQKGTGRA RQGSIRAPQW VHGGVVHGPV PRKYDQRTPK KMKAAALRYV
LSDRANAGRI AVVDFGIKDV PSTKTAVAAL TPVTNNQFTT VVLSRENINE WMSVRNIPTV
HVIFADQLNT YDVVTAQYVV FSKEGFEAFV AAKTEPVVKE A