Gene HMPREF0424_0255 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0255 
SymbolrplC 
ID8709991 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand
Start bp283809 
End bp284459 
Gene Length651 bp 
Protein Length216 aa 
Translation table11 
GC content54% 
IMG OID646482374 
Product50S ribosomal protein L3 
Protein accessionYP_003373512 
Protein GI283782758 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0087] Ribosomal protein L3 
TIGRFAM ID[TIGR03625] 50S ribosomal protein L3, bacterial 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones39 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGCAGA ATAAGAATCG CACTGCATTG CTCGGCCGCA AGCTGGGTAT GTCGCAGGTT 
TGGGATGAAA ACGGCTTCTT CGTCCCCGTA ACTCTGGTTG AAGTTGCTAC TAACGTAGTT
ACCGCTGTAA AGACTGTAGA GTCTGACGGT TATTGCGCAG TACAGCTCGG TTACGGCCAG
ATTGATCCTA CCAAGGTGAC TAAGCCATTG GCTGGTCATT TTGCAAAGGC TGGTGTAACT
CCTCGTCGTC ACCTCGCTGA GGTGCGCACC GAGAACGCGG CAGATTATCA GCCAGGTCAG
GAATTGACTG CTGAATTGTT CGCTGAGGGT TCTGAAGTAG ATGTCACTGG CACTACCAAG
GGTAAGGGTT TTGCTGGCAC TATCAAGCGT TGGGGCTTCA AGTCCTATCG TCGTACTCAC
GGCTCGCACA AGAACGAACG TCGCCCAGGT TCTGTGGGCG CTTGCGCAAC TCCAAGCCGC
ATTTTGAAGG GCAAGCGTAT GGCTGGTCGC ATGGGTCATG TGACTTCCAC CGCGCTTAAC
CTCACCATCG TTTCTTCGGA TGTCGAGAAC GGCATTCTCG CTATTAAGGG CGCTGTTCCA
GGTCCTAAGG GCGCAATCGT TCTCGTCCGT TCGGCAGTGA AGGGAGCCTG A
 
Protein sequence
MSQNKNRTAL LGRKLGMSQV WDENGFFVPV TLVEVATNVV TAVKTVESDG YCAVQLGYGQ 
IDPTKVTKPL AGHFAKAGVT PRRHLAEVRT ENAADYQPGQ ELTAELFAEG SEVDVTGTTK
GKGFAGTIKR WGFKSYRRTH GSHKNERRPG SVGACATPSR ILKGKRMAGR MGHVTSTALN
LTIVSSDVEN GILAIKGAVP GPKGAIVLVR SAVKGA