Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_0255 |
Symbol | rplC |
ID | 8709991 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | + |
Start bp | 283809 |
End bp | 284459 |
Gene Length | 651 bp |
Protein Length | 216 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 646482374 |
Product | 50S ribosomal protein L3 |
Protein accession | YP_003373512 |
Protein GI | 283782758 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0087] Ribosomal protein L3 |
TIGRFAM ID | [TIGR03625] 50S ribosomal protein L3, bacterial |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 39 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGCAGA ATAAGAATCG CACTGCATTG CTCGGCCGCA AGCTGGGTAT GTCGCAGGTT TGGGATGAAA ACGGCTTCTT CGTCCCCGTA ACTCTGGTTG AAGTTGCTAC TAACGTAGTT ACCGCTGTAA AGACTGTAGA GTCTGACGGT TATTGCGCAG TACAGCTCGG TTACGGCCAG ATTGATCCTA CCAAGGTGAC TAAGCCATTG GCTGGTCATT TTGCAAAGGC TGGTGTAACT CCTCGTCGTC ACCTCGCTGA GGTGCGCACC GAGAACGCGG CAGATTATCA GCCAGGTCAG GAATTGACTG CTGAATTGTT CGCTGAGGGT TCTGAAGTAG ATGTCACTGG CACTACCAAG GGTAAGGGTT TTGCTGGCAC TATCAAGCGT TGGGGCTTCA AGTCCTATCG TCGTACTCAC GGCTCGCACA AGAACGAACG TCGCCCAGGT TCTGTGGGCG CTTGCGCAAC TCCAAGCCGC ATTTTGAAGG GCAAGCGTAT GGCTGGTCGC ATGGGTCATG TGACTTCCAC CGCGCTTAAC CTCACCATCG TTTCTTCGGA TGTCGAGAAC GGCATTCTCG CTATTAAGGG CGCTGTTCCA GGTCCTAAGG GCGCAATCGT TCTCGTCCGT TCGGCAGTGA AGGGAGCCTG A
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Protein sequence | MSQNKNRTAL LGRKLGMSQV WDENGFFVPV TLVEVATNVV TAVKTVESDG YCAVQLGYGQ IDPTKVTKPL AGHFAKAGVT PRRHLAEVRT ENAADYQPGQ ELTAELFAEG SEVDVTGTTK GKGFAGTIKR WGFKSYRRTH GSHKNERRPG SVGACATPSR ILKGKRMAGR MGHVTSTALN LTIVSSDVEN GILAIKGAVP GPKGAIVLVR SAVKGA
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