| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0251 |
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| Symbol | malQ_1 |
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| ID | 8709815 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 276717 |
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| End bp | 278882 |
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| Gene Length | 2166 bp |
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| Protein Length | 721 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 646482370 |
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| Product | 4-alpha-glucanotransferase |
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| Protein accession | YP_003373508 |
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| Protein GI | 283782754 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1640] 4-alpha-glucanotransferase |
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| TIGRFAM ID | [TIGR00217] 4-alpha-glucanotransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATAATA CAACAGATGA AGAAGTAGCA ATGAAGCCAT TACACCGTCT TGCTGAATTA
ATGGGCGTTG GCGTGAGTTT TATTGGTTCG GATAATCAAA AACACGAGAT TCAAGATAAC
GTATTAGTTT CTGTCTTAAG CGCATTAGGC GTAGATGCTT CCACAAATGA GACAATAGAA
AAATCTACAA ACGACGTTTT AGCGTATCGA CACGGTCGTA TTGTTGCTCC AACAGTTTTG
CACACTGTTG GCAAATGTGA TGAAGTTACA GTTAATACGG GAATATTAGA ATACCCAGTT
GCAACATTGA CATTGGAAAA TGGTGAACAA TATAAAGGCG ATTTAACTAT TGTTCCTAAC
GAAAATGATG TTGCATACCC TGTAAATGGA AAATTTGTTG CAACATCTCT TATAAAAATT
CCTGAAGATG TGCCAATGGG TTATCACACA TTGCGTGTGA CAGTTGGTGA GAGACAAGAA
GAAGCAACAC TTATTAGTGC TCCAGAAAGC ATTGATACGC TGAATTCCTT AGAGCCCAAT
GGAGAACAGC TTTGGGGATG GATGGCACAA CTTTACTCAA TCCGTTCTTC AAAGTCTTGG
GGTGTTGGTG ATTTTGCTGA TTTGGCGACT CTTCTTACTG AAGCTAAGCA AAAAACTGGC
GCTGACTTTG TGTTAATAAA CCCAATGCAT GCAGGTGAGC CTATAACTCC GCTTACTCCA
TCCCCATACC TGCCGGTTGC TCGAGGAATG GTAAACGTAA CGTATATTAG CCCAGAAAGT
ATTCCTGAGT ACGAAACGTT AAACGATAAA ACTCGCAAAG AAATTGAAAA GCTTCATGGA
CAGGTTGAGC CGCTTAACAA TGACGCGCAA ATAATAGACC GTGATTCCAT GTGGCGTGTA
AAAATGCGTG CATTGTGGCT GATTTTCAAG GCTGGTATGT CTGAAGATCG CGCTCGCATT
TTTAATGAGT TTAAGCATGA GATGGGTGAC AGGCTTGAAT CTTATGCCAC TTGGTGCTTG
TGCTACGACA AGTGGGGTGC TCCAAAGGGT GACGATTGCT GGGAGAAAAC TCTTACTAAG
GATTCTGATC AAGTTCGCGA ATTAGCTAAT CGTTTCCCAG ATACTCTTGA GTTTTATCGT
TGGCTTGAGT GGGTTGCTTT TACGCAATTG CATGATGCTC AAGTTGCTGC ACGTAAAGCT
GGTATGAAAA TCGGCATTAT GTCTGATATG GCTGTTGGCG TGCATCCTGC AGGATCTGAA
GTTTGGTGGA ATCCGGAGAG ATTTGCTAAC GGAGCTACTG TTGGCGCTCC ACCTGATTAC
TTCAATCAGC AAGGTCAAGA TTGGTCTCAG CCACCTTTGC ACCCATTTGA GCTTGAGCGG
ACTGGTTTTA AAACATACCG AGATATGGTT CATGGAATGT TTGCTTCGGC AGGTGCTGTT
CGCATTGACC ATATTCTTGG ACTTTTCCGC TTATGGTGGA TTCCAGAAGG TTCAGCTCCA
AGTGGCGGTG CTTATGTTTA CTACGATGCT GATATTATGC TTGGCATTTT GGCAATTGAA
GCCGCTCGTG CTCACGGTGT AGTTGTTGGC GAAGATTTGG GTGTTTTGCC CGCAAATGCT
TTGGAAGTGT TGCGCAAGAA GGCTGTGCTT GGTTGCACGG TTGAATGGTT CGAAGAGCGT
GACGGCGAAT TCCGTACTCC AGACAAGTGG CGCGAAATGA CGCTTGCATC TGTAAATACG
CATGATTTGC CTCCTGCTGC CGGCTATTTG CGCTATGAGC AAGTTAATAT TCGTGAGCGC
TTGCACTTGC TTACTGGTTC TGTTGAAGAA TTCCGCGCTG GAGCTGAGGC AGAGCATCGC
GCTATGATGC GAATGTTGGT CAAAGGTGGT TATTTGGATG CTCAGTTGCT TGAGGATGAG
GATGCTCATA CTCAGGAGAT TGTTGAAGCA TTGTACCGCG CTTTGAAGGC TGCTCCTTCC
AGATTGTTGG CTGCTTCTTT GGTCGATGCA GTTGGAGAGT GTCGTGTGCA AAATCAGCCT
GGAACGAATG ACGAGTATCC GAATTGGCGT ATTCCATTAG CTGATGGTGA AGGCAATCCT
GTGTCCTTGG ATAATATGTT TGATTTGCCT CGAGTGCAGT CGCTTTCTGC GATTATGAAT
GCATAA
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| Protein sequence | MDNTTDEEVA MKPLHRLAEL MGVGVSFIGS DNQKHEIQDN VLVSVLSALG VDASTNETIE
KSTNDVLAYR HGRIVAPTVL HTVGKCDEVT VNTGILEYPV ATLTLENGEQ YKGDLTIVPN
ENDVAYPVNG KFVATSLIKI PEDVPMGYHT LRVTVGERQE EATLISAPES IDTLNSLEPN
GEQLWGWMAQ LYSIRSSKSW GVGDFADLAT LLTEAKQKTG ADFVLINPMH AGEPITPLTP
SPYLPVARGM VNVTYISPES IPEYETLNDK TRKEIEKLHG QVEPLNNDAQ IIDRDSMWRV
KMRALWLIFK AGMSEDRARI FNEFKHEMGD RLESYATWCL CYDKWGAPKG DDCWEKTLTK
DSDQVRELAN RFPDTLEFYR WLEWVAFTQL HDAQVAARKA GMKIGIMSDM AVGVHPAGSE
VWWNPERFAN GATVGAPPDY FNQQGQDWSQ PPLHPFELER TGFKTYRDMV HGMFASAGAV
RIDHILGLFR LWWIPEGSAP SGGAYVYYDA DIMLGILAIE AARAHGVVVG EDLGVLPANA
LEVLRKKAVL GCTVEWFEER DGEFRTPDKW REMTLASVNT HDLPPAAGYL RYEQVNIRER
LHLLTGSVEE FRAGAEAEHR AMMRMLVKGG YLDAQLLEDE DAHTQEIVEA LYRALKAAPS
RLLAASLVDA VGECRVQNQP GTNDEYPNWR IPLADGEGNP VSLDNMFDLP RVQSLSAIMN
A
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