Gene HMPREF0424_0250 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0250 
Symbol 
ID8708952 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand+ 
Start bp276073 
End bp276699 
Gene Length627 bp 
Protein Length208 aa 
Translation table11 
GC content40% 
IMG OID646482369 
Producthypothetical protein 
Protein accessionYP_003373507 
Protein GI283782753 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAAAGA CTAATGAAAA AACAAACACT ATTGACGATT CATCTTATGA ACCTTTAACT 
GCTGTATATG AGCATTTACG ACATAGCGAA GATTCAGCTG AGCTTCATGA ATTTGCTAGG 
AGAGAATTAC CGGATCGATC AGACCAAGCG GCATTTTCTA GAGCCACCTC CTTGCTTGAA 
GCAGTTGCAG GTAATATCAA TACTCCAGAA GAAGACCGTA TTTATTTAGC TACAGAAATG 
CCTTTCCCAA ACATATTAGT GAAACTTTCT GAAGATTCTG CTGATAAAGT ACGTTTGGCT 
GTTGCTGAAA ATAAAAATGC TAAAAATTGG TTAGTTGGAA GACTTACTAA AGATTCATGT 
AACGCAGTTC GAAATGCTGC ATTATGCAAT CCAAAAGCTT CTTGGAAAAT GCGTTTAGAG 
GGTGCGCAAT CGGATGGCAT AAGTGCTGAA ACATTGAAAT ATCTCGCCTC CCTTGGTGTT 
AGTGCAGAAG AAAACGCTCC AATTGTATTA GCTTCCATGG TACGAAGAGC TGTTGCGCTA 
AATCCTGGTG TTCCACAAAA TGTGCTGCAA GAACTATGCA ACGATAAATC TGAAGATGTA 
TCATCAGCGG CGCGCAGTCG TTGCTAA
 
Protein sequence
MEKTNEKTNT IDDSSYEPLT AVYEHLRHSE DSAELHEFAR RELPDRSDQA AFSRATSLLE 
AVAGNINTPE EDRIYLATEM PFPNILVKLS EDSADKVRLA VAENKNAKNW LVGRLTKDSC 
NAVRNAALCN PKASWKMRLE GAQSDGISAE TLKYLASLGV SAEENAPIVL ASMVRRAVAL 
NPGVPQNVLQ ELCNDKSEDV SSAARSRC