Gene HMPREF0424_0249 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0249 
Symbol 
ID8709779 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand+ 
Start bp275394 
End bp276062 
Gene Length669 bp 
Protein Length222 aa 
Translation table11 
GC content39% 
IMG OID646482368 
Productuncharacterized protein, YigZ family 
Protein accessionYP_003373506 
Protein GI283782752 
COG category[S] Function unknown 
COG ID[COG1739] Uncharacterized conserved protein 
TIGRFAM ID[TIGR00257] uncharacterized protein, YigZ family 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACTAATT CGCATAATAT TCTGCACACT GTTCGTCAAT TGCAATCACA GCCTTTCGAG 
GCTTCTTTCG TAGAGAAAAA ATCAGAGTTT ATTGGATGCA TTTGTCATAT TGATAATCTT 
GACGATGCTG CGGAATTTAT GCAATCAGTG CGTTTTAAGA ATCCTAAAGC TCGCCATGTT 
GCGTATGCTG CAATTTGTGG CTCGTCGAAA GCTCAATTGC ATGAGCGCAT GAGTGACGAT 
GGTGAGCCAA CTGGAACAGC AGGAAAACCA ATATTAGATG TACTCAGATT GTCAAATTTA 
ACAGATTGTG TAGTAACAGT AACGCGATAT TTTGGTGGTA TTTTGCTTGG AGCTGGTGGC 
CTAACCAGAG CTTATGTGCG TGCAGCAAGT ATGGCAGTAG AATCTGCGCA AATAGTTGAT 
ATTATTACGT GCACTCGTTT TACTTGCAAG TTGCAATATC AACAATTGCG AATGTTGCAG 
CATATTGTAA GCCAAATGGA AGGCATAATT GACAACGAAA TTTATGGTGC TGAAATTTCT 
CTTAATATTG CTATTCCAAC TTTAAAATCA CAAGAATTTC TTGATATGGT TCAGAATGCT 
TTTTCTGGAA ACGTTGTGCC GAAAGCAGAT GGTACTCTAA GTAATAAGCT GATAGATACT 
AAGCGTTAA
 
Protein sequence
MTNSHNILHT VRQLQSQPFE ASFVEKKSEF IGCICHIDNL DDAAEFMQSV RFKNPKARHV 
AYAAICGSSK AQLHERMSDD GEPTGTAGKP ILDVLRLSNL TDCVVTVTRY FGGILLGAGG 
LTRAYVRAAS MAVESAQIVD IITCTRFTCK LQYQQLRMLQ HIVSQMEGII DNEIYGAEIS 
LNIAIPTLKS QEFLDMVQNA FSGNVVPKAD GTLSNKLIDT KR