Gene HMPREF0424_0248 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0248 
Symbol 
ID8709372 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand
Start bp275085 
End bp275378 
Gene Length294 bp 
Protein Length97 aa 
Translation table11 
GC content38% 
IMG OID646482367 
Producthypothetical protein 
Protein accessionYP_003373505 
Protein GI283782751 
COG category[S] Function unknown 
COG ID[COG1937] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones38 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAATT ATGATATTGA TAAAGAAAAA CTGATAGTAC GCATGCATCG AGTACAAGGT 
CAGCTTGCAG CAGTCAATAC TATGATTGAA AACGATGCGA AGTGTCAAGA TGTTCTTATG
CAGCTTTCCG CTGCAACTGC TGCTTTACAT TCTTTAGCAG TGATAGTGGC AAGGGAACAT
GTCAATAAAG AAATACATGA ATCTGTAAAA ATTGGTACCG AAGAAGGTGC CGATGCAGCA
ATGGAAGATA TTTCTGGTAT CATTGACAGG TTATTGCGTT ACGAAAAAGC GTAG
 
Protein sequence
MKNYDIDKEK LIVRMHRVQG QLAAVNTMIE NDAKCQDVLM QLSAATAALH SLAVIVAREH 
VNKEIHESVK IGTEEGADAA MEDISGIIDR LLRYEKA