Gene HMPREF0424_0222 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0222 
SymbolpstC 
ID8709688 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand+ 
Start bp248353 
End bp249357 
Gene Length1005 bp 
Protein Length334 aa 
Translation table11 
GC content44% 
IMG OID646482341 
Productphosphate ABC transporter, permease protein PstC 
Protein accessionYP_003373483 
Protein GI283782729 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0573] ABC-type phosphate transport system, permease component 
TIGRFAM ID[TIGR02138] phosphate ABC transporter, permease protein PstC 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones38 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGAGTTCTA CGAAAAATGC GAAAGCAGTT GCGAATAGTG CAAACGAAAC TGCTCAAATT 
TCTGAGAGCA ATAGCAAAAA TTATGTTGGC ACTCATCTTG TAGACCGTCT TTTTAAAGGC 
GTGGCTGCAG GCTGTGGCAT GCTAATTTTG CTTGTTCTTA CAGCAGTTGC AGTATTTCTG 
CTGTTTCGTG CTTTGCCGTT ATTAAGTGGA AATCACAATC AAGTAAGTCA TGTGTTTGCT 
GATTTTACTG GTGGTAAAGC GCATGATTTT ATAAGCTATG TGGCTCCGCT TATTTTTGGC 
ACAGTGCTTA TGTCTGCGCT CGCGCTGCTG TTCGCATTTT TTGTGGCAAT TGGTATTGCT 
CTGTTTATTT CGTATTATGC GCCTAAAAAA ATTGTTCCGC TTTTGAGTGG AGTAATTGAT 
TTGCTTGCTG CGATTCCGTC CGTAATCTAT GGTTTGTGGG GTGGATTGGT TTTGGTTCCA 
GCTATGTATC CTTTCTGGGA TTGGGTTTCT AAACTTTTTG GCTGGATTCC GCTATTTTCT 
GGTCCGGCGG CTAATCCTTC TCGTTCTGCT GCTACGGTTG CATTAGTTTT GGCTGTGATG 
ATTTTGCCGA TTATTACTTC TATGGCTCGC GATATTTTCC AGCAGGCTCC TCGCTTGCAG 
CAGGAAGGTG CGCTTGCGCT CGGCGCTACG AAGTGGGAGA TGATTAAGTT AGCTGTTTTG 
CCGTTTGCAA AGTCTGGTAT TGTGTCGGCT TCTATGCTTG GGCTGGGCCG TGCTTTGGGT 
GAAACGATGG CAGTTTTGAT GATTTTGTCT CCTGGATTTA CTTTTGGTAT CAATATTTTC 
AAGGCTTCTC AAAATCAAAC TATTGCCGCA AATATTGCAG CGCAGTATCC GGAAGCGAAC 
GGACTTGGCG TAAGTGCGCT TATTGCAACC GGCTTAGTTT TGTTCGTTAT TTCTTTTGCA 
GTCAACTTTA TTGCTCGCAA AATTACCGGA AAGGCGGGCG CATAA
 
Protein sequence
MSSTKNAKAV ANSANETAQI SESNSKNYVG THLVDRLFKG VAAGCGMLIL LVLTAVAVFL 
LFRALPLLSG NHNQVSHVFA DFTGGKAHDF ISYVAPLIFG TVLMSALALL FAFFVAIGIA 
LFISYYAPKK IVPLLSGVID LLAAIPSVIY GLWGGLVLVP AMYPFWDWVS KLFGWIPLFS 
GPAANPSRSA ATVALVLAVM ILPIITSMAR DIFQQAPRLQ QEGALALGAT KWEMIKLAVL 
PFAKSGIVSA SMLGLGRALG ETMAVLMILS PGFTFGINIF KASQNQTIAA NIAAQYPEAN 
GLGVSALIAT GLVLFVISFA VNFIARKITG KAGA