| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0218 |
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| Symbol | |
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| ID | 8709802 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 244375 |
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| End bp | 245556 |
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| Gene Length | 1182 bp |
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| Protein Length | 393 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 646482337 |
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| Product | 3-deoxy-7-phosphoheptulonate synthase |
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| Protein accession | YP_003373479 |
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| Protein GI | 283782725 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0722] 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase |
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| TIGRFAM ID | [TIGR00034] phospho-2-dehydro-3-deoxyheptonate aldolase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTTCTA CAGCTGAGCA GCGTACTTCT CGCGCGGTAA AGAAGGAAGT TGAGGAGGGG
CGTAACCCTC TTAATTCTGC GAAGTTTCAG CGCTGGGAAG ACCAGGTTGG TGTGGATCGC
ATAATAAACC GCCGCGTGCT TGAGCTGGAG CCTTTGCCAA CTCCTGCTCA GGTGCTTGGT
GAGTTGCCAT TGTCGCCGTA TGCGCAGGAT ATTGTTGCGC AGTCGCGCGA TGAGATTCGT
AGCTGTTTGA ATGGCGAAGA TGATCGCTTG TTGGTTATTG TTGGCCCGTG TTCTGTGCAT
GATCCTAAGG CTGCTCTTGA TTATGCGAGT CGTTTAGCTA AGTTGCGTTC GGAGCTTGAA
GATGAGCTTC TTATTGTTAT GCGCGTGTAT TTTGAAAAGC CGCGCACAGC TCTTGGCTGG
AAGGGTTTGA TTAACGACCC GGATATTGAC GGAACGCATG ATATTCATAA GGGTTTGTTG
CTTGCGCGTA AGACTTTGCT CGGCGTGTTG GATGCTGGTT TGGCTGCTGC TACTGAATTT
TTGGAGCCGA CCAGCCCTCA GTTTATTGCG GATGCTGTGA GCTGGGGTGC GATTGGTGCG
CGTAATACTG AGTCTCAGAT TCATCGTCAG CTTGCTAGTG GTCTTTCTAT GCCGGTTGGT
TTTAAGAATG CTACGGATGG TTCCGTTTCT GCGGCTGTAA ATGGCTGCTT AGCTGCGAGC
CAGCATCATA CGTTCTTTGG TATTGATCAT CTTGGTCGCG CTTGTGCTGT GCAGACTCTT
GGCAACCCTG ATTGCCATGT GGTTTTGCGC GGTTCTAGTA AGGGTCCTAA TTATGATGCT
GCGTCGGTTG CTTCTGCTGT TGCTTCGATT CGTTTGCGCT TGGGCACTGG TTGTATGGCT
TCTAACGGCG TGGTTGTGGA TTGTTCGCAT GGTAATTCTG GCAAGGATGA GCGTCGCCAG
ATTGAGGTTG TGCGTGAGAT TGCAGATCGT TTGGCTGATG GCGAGCAGGG TATTAAGGGC
GTTATGATGG AGAGCTTCTT GCAGGGCGGC AATCAAGATC CTGCTCCTCT TAGCGAGCTT
GAATACGGCA AGTCTATTAC GGATCGTTGC ATTTCTTGGG AAGATACTGC CAATTTGCTA
AGAATTTTAG CTAAATCTGT AGCAACTCGC CGTAGAGCTT AG
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| Protein sequence | MASTAEQRTS RAVKKEVEEG RNPLNSAKFQ RWEDQVGVDR IINRRVLELE PLPTPAQVLG
ELPLSPYAQD IVAQSRDEIR SCLNGEDDRL LVIVGPCSVH DPKAALDYAS RLAKLRSELE
DELLIVMRVY FEKPRTALGW KGLINDPDID GTHDIHKGLL LARKTLLGVL DAGLAAATEF
LEPTSPQFIA DAVSWGAIGA RNTESQIHRQ LASGLSMPVG FKNATDGSVS AAVNGCLAAS
QHHTFFGIDH LGRACAVQTL GNPDCHVVLR GSSKGPNYDA ASVASAVASI RLRLGTGCMA
SNGVVVDCSH GNSGKDERRQ IEVVREIADR LADGEQGIKG VMMESFLQGG NQDPAPLSEL
EYGKSITDRC ISWEDTANLL RILAKSVATR RRA
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