Gene HMPREF0424_0210 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0210 
Symbol 
ID8710054 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand- 
Start bp233856 
End bp234542 
Gene Length687 bp 
Protein Length228 aa 
Translation table11 
GC content40% 
IMG OID646482329 
Producthypothetical protein 
Protein accessionYP_003373471 
Protein GI283782717 
COG category[S] Function unknown 
COG ID[COG0586] Uncharacterized membrane-associated protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGATTTA TTCATTTTAT TGTTAACCTA CTCAAGGATC CACGCTCAGC TATTGCAAGT 
TGGATTGCAA TGGGCACAGC TCCAGCATTA GGCCTTATTT TTCTCATTGT TTTTATTGAA 
ACAGGCGTAG TATTCTTCCC ATTCCTTCCA GGAGATTCAC TTCTTTTCGC AGCAGGGTTT 
TTTGCAGCTC CTGACGCTCA AACAGGTCAT AGCGCGCTTC CACTTCCACT ATTACTTGCC 
GTAGTGTGGC TAGCCCCAAT TATTGGCGAT CAGTGCAATT ACTTTATTGG TCATTTCTTC 
GGACGAAAGA TTGTAGAATC TGGGAAAGTA AAAGCGCTCA CTCCAGAACG AGTTGCAAAA 
ACCGAAAAAA TGATTGATAA ATGGGGTCCG CTGGCAGTAT TCTTGGGTAG ATTCTTCCCA 
TTCATACGCA CTTTTATGCC GTTCATTTCC GGAATTTCTG GAATGCGTTG GATACGCTTC 
ACACCATTTT CTGTACTAGG CGGTCTCGTT TGGTCGTCGC TTTTCACATT TCTTGGATAT 
TTCTTCGGCA AGATTGATTT CGTACAGAAG AATTTTGAAT TAGTAATTGT TGCAATTTTG 
CTTATCTCAC TTGTGCCAAC TTTTATTGGT TTATACAAAG CGCACAAAGC AAAGAAAGCA 
GCAAAACTTA ATAAAGAAAA CAAATAA
 
Protein sequence
MGFIHFIVNL LKDPRSAIAS WIAMGTAPAL GLIFLIVFIE TGVVFFPFLP GDSLLFAAGF 
FAAPDAQTGH SALPLPLLLA VVWLAPIIGD QCNYFIGHFF GRKIVESGKV KALTPERVAK 
TEKMIDKWGP LAVFLGRFFP FIRTFMPFIS GISGMRWIRF TPFSVLGGLV WSSLFTFLGY 
FFGKIDFVQK NFELVIVAIL LISLVPTFIG LYKAHKAKKA AKLNKENK