Gene HMPREF0424_0207 details

Gene Information

• Locus tag: HMPREF0424_0207
• ID: 8709251
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Gardnerella vaginalis 409-05
• Kingdom: Bacteria
• Replicon accession: NC_013721
• Strand: +
• Start bp: 229296
• End bp: 231209
• Gene Length: 1914 bp
• Protein Length: 637 aa
• Translation table: 11
• GC content: 38%
• IMG OID: 646482326
• Product: kinase domain protein
• Protein accession: YP_003373469
• Protein GI: 283782715
• COG category: [K] Transcription; [L] Replication, recombination and repair; [R] General function prediction only; [T] Signal transduction mechanisms
• COG ID: [COG0515] Serine/threonine protein kinase

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 31
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGTTTGTG TAGGCGGACG CTATCAGCTG CTTGGTGAGC TGGGGCGTGG TGGCACTTCA 
ACAGTGTTTC TTGCTGTTGA CACCGTTTTG CACAAGCAAT GGGCTGTTAA AGAAACGCTT 
CTGCAAGGAG ACGAAGAGTA TCAACGGCGT ATTATTCAAT CCTTACGTGC TGAAGCGAAT 
GTTTTAAAGG AATGCGATCA TCCAGCTATT CCGCGAATTG TTGATTTTTT TGAAGAAAAT 
GGTAGAGCTT ATGCTGTTCG CGATTATGTA AAGGGACGTT CTTTAAAATC TATTGTAGAA 
GAATCTGGAT TGCAAAATGT TGAAACTGTT CTTGATTTAG GTATGCAACT TTGCTCAATA 
CTTTCTTATT TACATTCGCA TTATCCGCCA ATTATATACG GTGATCTTAA GCCTTCTCAG 
GTTATGATTT CAGAAGATGG CACAGTCCGT TTGATTGATT TTGGTGCTGC AACGCAATTA 
TATGCAAACG GGGGAGTGCT TGATTTGCGC ACAATAGACC AGTGCGACGC GCGATTTGCT 
ACTAATATTT TTACCGCTCC TGAAATTTTG AACGAAAACT CTGCAGCAAC TACTTCAAGC 
GATGTGTATT CGATTGGAAT GACATTGCGT TACGCATTAT TACCAACTGA AGTGCCTAAA 
ACAAACGTGC AATCTGCTGT ACTATTGTCT CATGAGAATC GTGAAGTAGT AGAACAATTA 
GTGTCTGTGC TCGCAATAGC TACAGCTACT AAACCATCTC ATAGATATAA AGATTGCGAC 
GAAATGTTTT CTGCACTGGA AGCGTGTGAG CATACAGAAA AGCATTCGCA ACAATGCGAC 
ACCTCTACGA ATGTATTGCG ACGCAAACAA TGCAAAAATA GTTTTAAGCC TAGAAAAAAG 
CGCTATGCAA TTACGGCATT AATTGTTGTA GTACTAGTTT TTATAGTAAT TTTATTCAAC 
TGCTTAGGTT TATTTGTTGG GAATGCTTTT GTAAATCGAA ATAAGCAATC TTTTGATGGT 
GAGCCAAGTA GTAAAAGAAT TGAGGAAATA CGCAAAAATA ATAAAAGCTA CGATTCTTAC 
ATGCAATTAG CTGAGCGCGA AAGCAATTCG GATATTGCGT GTCGCTATAT TTCTCATGCA 
ATGCAAGTGC AAAATAGTAT GATCAAGAAG AAATATATAA GCAAAATATC ATTTAAACCT 
CTCCAAATTT TATTGCAAAT TCAACTTGCA GATCAGCAAT GGAGTGCCAA CGAAGAGCAA 
TGTTTTGTTG GTTTGATTAA TAAATACGAG CAAAACTTGC GTCCTGTAAA TAAAGATTGG 
TTGAATATTT CTATAGAAAT AGGCAAAGCG TATTGGTACT ATTTTGCAGG ATTTTCTGGA 
AAAGTTTCAC AAACAGAACG ATTATCTCGT ATGCGAGTAG CAAAAGTATG GTTCCAAGAG 
GCTCAAAAAT ATGAAAAAGA TGCGAATAAA GCGTCTTCGC AAGCTGTAGA AACTAATTCT 
GATGGCATAT CGCATACTGC TTCAAATCAA AAAATGTTAA GCGCGTACAT CGCTATTTCT 
GACGCTTATG CGCAACTTGT TGATGTTTCT AAAGATTGTG CAAGCGTAGA AACGTATAAA 
AATTATGTGA ATCAATTACA GCAGCTAATG CAAATTGTTG AGAAAGATCA CGGAGACGTT 
TTATTTGTGG ATACTGGAGA ACTAGTTTTG CAATCAATTC ATTCGTGGTT GCCGATGTTC 
CTAGAAAGCG GAGCCAGTAA ACAAGAGATT CAGCAAATGT GCGACAAGGC AGAATATCTT 
CTTAAACAAG CGCATGCGTC AAATGATGAG GCTGTAAGTA GAAAGAAAAA CGCAATCGAT 
AGCGTCAAAA AAGTTCAAGA CGAAATTAAT CTAGCTTTTT TGCAAAAGAA ATAA 

 

Protein sequence

MVCVGGRYQL LGELGRGGTS TVFLAVDTVL HKQWAVKETL LQGDEEYQRR IIQSLRAEAN 
VLKECDHPAI PRIVDFFEEN GRAYAVRDYV KGRSLKSIVE ESGLQNVETV LDLGMQLCSI 
LSYLHSHYPP IIYGDLKPSQ VMISEDGTVR LIDFGAATQL YANGGVLDLR TIDQCDARFA 
TNIFTAPEIL NENSAATTSS DVYSIGMTLR YALLPTEVPK TNVQSAVLLS HENREVVEQL 
VSVLAIATAT KPSHRYKDCD EMFSALEACE HTEKHSQQCD TSTNVLRRKQ CKNSFKPRKK 
RYAITALIVV VLVFIVILFN CLGLFVGNAF VNRNKQSFDG EPSSKRIEEI RKNNKSYDSY 
MQLAERESNS DIACRYISHA MQVQNSMIKK KYISKISFKP LQILLQIQLA DQQWSANEEQ 
CFVGLINKYE QNLRPVNKDW LNISIEIGKA YWYYFAGFSG KVSQTERLSR MRVAKVWFQE 
AQKYEKDANK ASSQAVETNS DGISHTASNQ KMLSAYIAIS DAYAQLVDVS KDCASVETYK 
NYVNQLQQLM QIVEKDHGDV LFVDTGELVL QSIHSWLPMF LESGASKQEI QQMCDKAEYL 
LKQAHASNDE AVSRKKNAID SVKKVQDEIN LAFLQKK