| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0205 |
|---|
| Symbol | |
|---|
| ID | 8710057 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Gardnerella vaginalis 409-05 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013721 |
|---|
| Strand | + |
|---|
| Start bp | 226360 |
|---|
| End bp | 227652 |
|---|
| Gene Length | 1293 bp |
|---|
| Protein Length | 430 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 646482324 |
|---|
| Product | Ser/Thr phosphatase family protein |
|---|
| Protein accession | YP_003373467 |
|---|
| Protein GI | 283782713 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTGATT CTGCACAATC TGAAGCTCAT GCATCTGCGG CACTTCCTTT ATCTGTTTCG
GCTCGTTTAG GACGTTTGCA GTTCCATCTT TCTGGTAAAT TCCGGGTGCT TCAGTGTGCA
GATGTTCAAG ATGGGTTACG TATTTCACAA GATACTATTC GACTTATTGC TTCTGCTTGC
GATGCTGTGC GACCAGATCT TGTAGTTTTT ACTGGAAACC AGATTGCAGG TTATGAAAGA
GTATTTGCAA AAACTTTTCA GCGTAGACTC TGGCAGGAAT CTTCCAATAT TTCAGCTTCT
GATAAGAAGC AATTGGTTGA TAAGGTGCAC GAATTTGTTG CTAAGTTAAT GAAGCCACTA
GAAGATCGCA GTATTCCGTG GGTTGTTACT TATGGGAATC ATGATTTCCA GTGCGGTCTG
AGTAATGAAG AGCTTGATAA GATATATCAA GATTTTCCAT GTTGCATGAA TCGCAGTGCT
TCTAATGTAT CTTCTGCAAG TGCTATGCAA TCGACAAAAT GTGTGTTGCC AAAGCAGATT
ATTTTTACAT GTGAGCCTGG TACTTTTGCC TTGCCTGTTA TGGATGAAAA GCATGAAAAG
GTTGTTTTTT CAATAGTTTT AGTTGATTCT GGAGATTATG CTAAATCCGG CGGATATGGT
AGCCCTTCTA AAAAAACTAT CGAGTTTATT TCTGGTCTTC CTTCTTATTT GCCTGAGCAT
ATTTGTGTTT TTCAGCATTT TCCATTGCCG CAATATTATC GTGTTCTTCG TGAAGTTCCG
CAAGAACTTG CTGCGCGCGA ACATGCTATT GAAGGGTATC GTACTTTTGC TGGTCGCTAT
TATGCTCTTG ACGAAAAACA TGTTCTGCCC GATGGGTATT TAGGTGAAGG AATCAGCTGC
CCTGACGCCG ATAGTGGTGA ATACGCTGCT TTGCTTGATG CAGGAGCTTT TGCGCTAATT
GCCGGTCACG ATCACCGCAA TTCTTTCGCA GCTAAAGATC CCGAGAGTAA TATGCTATTT
GTTGCCACTC CTACATGTGG TTTTGGATCT TACGGTCCTG AACCTGCTAA AAGAGGCGTG
CGCTTGCTTG AATTTGATAT TCGTCACCCG TTTGAACCGC GTACGCAAAT GCTTGAATTT
GGGAATCTTG TTGGCAAACC TTCTTCCAAA AAAGCCTATA CTTATGCTCT TACAGCTGAG
TCTGAGCATG AATTGCCAGA AGTGGATTTA TTACGTAAAC CATCATTACT TACTAGATTG
ATTCGTCGAT GGCGTCAACG ATCTACGCGC TAA
|
|---|
| Protein sequence | MTDSAQSEAH ASAALPLSVS ARLGRLQFHL SGKFRVLQCA DVQDGLRISQ DTIRLIASAC
DAVRPDLVVF TGNQIAGYER VFAKTFQRRL WQESSNISAS DKKQLVDKVH EFVAKLMKPL
EDRSIPWVVT YGNHDFQCGL SNEELDKIYQ DFPCCMNRSA SNVSSASAMQ STKCVLPKQI
IFTCEPGTFA LPVMDEKHEK VVFSIVLVDS GDYAKSGGYG SPSKKTIEFI SGLPSYLPEH
ICVFQHFPLP QYYRVLREVP QELAAREHAI EGYRTFAGRY YALDEKHVLP DGYLGEGISC
PDADSGEYAA LLDAGAFALI AGHDHRNSFA AKDPESNMLF VATPTCGFGS YGPEPAKRGV
RLLEFDIRHP FEPRTQMLEF GNLVGKPSSK KAYTYALTAE SEHELPEVDL LRKPSLLTRL
IRRWRQRSTR
|
|---|
| |