| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0192 |
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| Symbol | valS |
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| ID | 8709302 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 213981 |
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| End bp | 216758 |
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| Gene Length | 2778 bp |
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| Protein Length | 925 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 646482311 |
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| Product | valine--tRNA ligase |
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| Protein accession | YP_003373456 |
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| Protein GI | 283782702 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0525] Valyl-tRNA synthetase |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGAAC AGGATAATAA CGCAGTAAAA CACGCATATT TAACACCATT GCCTAACAAG
GTTGGTGTTG ATGGTCTTGA AGACAAGTGG CGTAGTAATT GGGACGAAGC TAAGACTTAC
GCATTCCATA ATTCTCGCGA CCGTAAGGCC GTATATTCTA TCGATACTCC ACCTCCAACC
GTTAGTGGTC ACTTGCACGT AGGTCACGTA TTCTCTTACA CGCATACGGA TGTCATTGCG
CGATATAAGC GCATGCAAGG CTTTGACGTG TTCTACCCAA TGGGTTGGGA CGATAACGGC
TTGCCAACAG AGCGCCGAGT ACAAAATTAT TACGGCGTTA GAGTGGATAC TTCGTTGAAG
TATGACCCTG ATTTTAAGCC GCCTTTTGAA GGTACTGAAG GTAAGAAGAT TGAGGCAAAA
GATCAGGTTC CTGTAAGCCG ACAGAACTTT ATTGAACTTT GCGAACGCTT AACTTCTCAG
GACGAGAAGC TTTTTGAAGC TTTGTGGCGT AGGCTTGGTC TTTCTGTGGA CTGGTCGCAA
ACTTACCACA CTATTGGTGA GCAGCCTCGC CGAGTTGCAC AAAAAGCATT CTTGCGCAAT
CTTGCTCGCG GAGAAGCGTA TCAGAAAGAT GCTCCAGGTT TGTGGGATGT TACATTCCAG
ACTGCTGTTG CTCAGGCTGA GCTTGAATCG CGCGAATATC CTGGTTTCTA CCATAAGATT
GCGTTCCGTT TTGAAGATGG TACGCCAATT TATATTGAAA CTACGCGCCC AGAATTGCTT
GCTGCATGCA CCTCTTTGAT TGCAAATCCA GAAGATGAGC GTTATAAGAA GTACTTTGGT
CAGGAAGTTT ATTCTCCACT GTTTAAGGTG AAAGTTCCAA TTTTGGCGCA TTCTGCTGCT
CAAATGGACA AGGGTGCAGG CATTGCAATG TGCTGCACTT TCGGTGATGT AACCGACGTT
GAGTGGTGGC GTGACTTGAA TCTTCCAACT CGACCAATCA TTCAGCGCAA CGGCCGCATT
GTAATGACCA CTCCTGATTG GATTACGGAC GAGTCCGGCC GCGAAATGTT CGAGAAAATT
GCTGGTAAAA CCACTTTCTC TGCTCGTAAG GAAATTGTTG AAGCTTTGCA AGCAGCTGGA
GATATGGAAG GCGAACCAAA GCCAACAAAG CGTATGACGA ACTTCTACGA AAAGGGTGAT
AAGCCTTTGG AAATCGTCAC TTCTCGTCAG TGGTACTTAA AGAACGGTGG CACGGACGAA
AAGTTGAATG CTGAGCTTAT TGAGCGCGGC AAGGAGCTTA ATTTCCACCC AGACTTTATG
CGCGTGCGCT ACGAGAATTG GGTTCATGGA TTGAATGGTG ACTGGCTTAT TTCTCGCCAG
CGCTTCTTCG GCGTGCCATT CCCACTTTGG TATCCAGTAA ACGAAAATGG GGAAGTGGAT
TACGAGCATC CTTTGACTCC TAGCGAAGAC CGTTTGCCAA TCGACCCAAC TATCGATGTT
CCAGAAGGAT TCGACGAATC TCAGCGCGAC CAGCCAAACG GCTTTACTGC TGAGCAAGAC
ATTATGGACA CTTGGGCAAC ATCTTCCTTA ACTCCGCAAA TTGTGACCCG TTGGGAAGAG
CCAGGTGAGG AAAATCAAGC TTTGTTTAAG GCTACTTTCC CAATGGATTT GCGTCCACAA
GGTCAAGATA TTATTCGTAC TTGGCTGTTT AGTACGGTTG ATCGTGCGCA TCTTGAAAAT
GGCTGCTTGC CTTGGAAGCA TGCTGCGCTT TCTGGTTGGA TTCTTGATCC TGACCATAAG
AAGATGTCTA AATCTAAGGG CAATGTGGTT GTGCCAAATA AACCAATCGA AGAGTTTGGC
GCGGATGCTG TGCGCTACTG GGCAACTTCT GCAAAACTTG GCTTGGATGC AACTTACGAC
GAAGGTCAAA TGAAGATTGG TCGACGTTTA GCGATTAAGC TTTTGAATGC TACGAAGTTT
GCGCTCGCAA TTGGTCGCGA AGATGATGAG CATCAGGTTC TTGAGTCTGC CAGCGCGGAT
TGGGATTTTG CAGATGTTAC GGAAGTTTTG GATCGCTCTG TTATGGCAAA GCTTGCATCC
GTTATTCGTA CTGCGACTGA TGCGCTTGAA TCTTACGAGC ATTCTAAGGC TTTGGAAGCA
ATCGAAACAT TCTTCTGGGA GTTCTGTGAC GATTACATTG AGCTTGCAAA GAATCGTGCT
TACGGTACTG CAGAATCCAC TGGACGCACT CCAAGTGAAG CTGCTGTGAA GTCTGCTCGC
ACAACTCTTG GTCTTGCACT CGATGCTTTG GCTCGCTTGC TTGCTCCTTA CTTGCCTTAC
GCTACGGAAG AAGTGTGGAG CTGGATGCAT GACGGCGAAG GATCCGTGCA TCGTGCTAGC
TGGCCATGCG CTAAGGCGTA TGAGTCTGCT GCAAACGGAG TTTCTGCAGA CACTTTGGCT
TACGCGGGTG AAGCTTTGGC TACTTTGCGC AAGATTAAGT CTGAAGCAAA AGTTTCTATG
AAGACTCCTA TTTTGCAAGT AACTTTGAAC GTTGCAGAAA ACGCTTACAA GGCTGTTGAG
GAGACTTTGG ATGACGTTGC TGAAGCTGGT CGCGTTACTG GAGAAGTAAA ACTTAACGCT
GTTAAGGCTG CAGTTGCTGG AGATTCTTCT GCTTCTGAAT CTGAATCTGC TTCTGATTCT
GCAGAATCTG ATGCAGCTAA CGTAAACGTT TCAGTTGCTC AAAGCGAACT CGGCGAAGCT
CCTGCAAAAA AGAAGTAG
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| Protein sequence | MSEQDNNAVK HAYLTPLPNK VGVDGLEDKW RSNWDEAKTY AFHNSRDRKA VYSIDTPPPT
VSGHLHVGHV FSYTHTDVIA RYKRMQGFDV FYPMGWDDNG LPTERRVQNY YGVRVDTSLK
YDPDFKPPFE GTEGKKIEAK DQVPVSRQNF IELCERLTSQ DEKLFEALWR RLGLSVDWSQ
TYHTIGEQPR RVAQKAFLRN LARGEAYQKD APGLWDVTFQ TAVAQAELES REYPGFYHKI
AFRFEDGTPI YIETTRPELL AACTSLIANP EDERYKKYFG QEVYSPLFKV KVPILAHSAA
QMDKGAGIAM CCTFGDVTDV EWWRDLNLPT RPIIQRNGRI VMTTPDWITD ESGREMFEKI
AGKTTFSARK EIVEALQAAG DMEGEPKPTK RMTNFYEKGD KPLEIVTSRQ WYLKNGGTDE
KLNAELIERG KELNFHPDFM RVRYENWVHG LNGDWLISRQ RFFGVPFPLW YPVNENGEVD
YEHPLTPSED RLPIDPTIDV PEGFDESQRD QPNGFTAEQD IMDTWATSSL TPQIVTRWEE
PGEENQALFK ATFPMDLRPQ GQDIIRTWLF STVDRAHLEN GCLPWKHAAL SGWILDPDHK
KMSKSKGNVV VPNKPIEEFG ADAVRYWATS AKLGLDATYD EGQMKIGRRL AIKLLNATKF
ALAIGREDDE HQVLESASAD WDFADVTEVL DRSVMAKLAS VIRTATDALE SYEHSKALEA
IETFFWEFCD DYIELAKNRA YGTAESTGRT PSEAAVKSAR TTLGLALDAL ARLLAPYLPY
ATEEVWSWMH DGEGSVHRAS WPCAKAYESA ANGVSADTLA YAGEALATLR KIKSEAKVSM
KTPILQVTLN VAENAYKAVE ETLDDVAEAG RVTGEVKLNA VKAAVAGDSS ASESESASDS
AESDAANVNV SVAQSELGEA PAKKK
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