| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0191 |
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| Symbol | |
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| ID | 8709898 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 212445 |
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| End bp | 213932 |
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| Gene Length | 1488 bp |
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| Protein Length | 495 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 646482310 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_003373455 |
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| Protein GI | 283782701 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGTTGTGT CTGTAATAAT GAGCGGCATT TTGTGGTGTG GATGGCAAAT GTACCAGGGT
CATTCGCCTT TTGCTGCAAT AATGCATCCA GCTAGTAACT CAGTGCTAAA AGTTGGTCTA
CGTACTGCTC CTGAATCTCT TGATATTAGA AACGACGACA GTGACGCTTT ACAGCAAGCT
TTAATTGGTA ATGTTTACGA AACTCTTGTT AAACGTGGCG ATGATAATAG TTTGCAACCA
GGTCTCGCGA AGTCATGGGA TATTTCGAAA GACGGCTTAA CATATCGTTT TAATTTGCGT
CAAGGTGTGC ATTTCTCTAA CGGTAGTGAG ATGACTTCAA ATTCCGTATT ACAATCTTTG
AAACAAGGCA TCACAAATAA TTATCCTGGT TATAGTGCAC TTACAAATAT TAAAACTGTT
AATAATCCGG ATGATTACAC TTTAGTAATT ACACTTAATA ATCCAGATGC TTTACTTCTA
CGTCGTCTTG CTGGACGTGT TGGCATTGTC TATGACACAA AATCGATGAT CGACTATGCA
AGTGCTGCTC TTGGCACAGG TCCTTTCACT GTAAGTGACT ACAATAAAGG CAATTCTTTA
GTATTACTTC GCAACGATAA ATATTGGGGA ACCCCTGCTT CTTGTGCAAG TATTACTTTG
CAATATTTCA ATAGCGATAC TGCTCTAGCT GAGGCAATGG AAAAGGGCAA TATTCAAATG
GCAGTTCCGC TTGAAGGTAA CGAAAATAAG CGCCTTGCTG CTGTTGCTAA TACGCAAATG
GTAGAGGGTC AGAGCACAAG AGTGCGATTT ATTGCAATAA ATACAACAGT TTCGTCGATT
TTCTGCGATG AGCAGGCTCG TAAAGCTGCG AGATACGCTT TGAATGCGCA AACTGTACTT
GCAGCTGATG GCAATGGTGG TGTTCCAGTA GGAGGACCTA TTGATCCTCT TTCAACTGGT
TATGAAGATT TAAATGGATT GTATCCTTAT AATCCAGGCA AAGCTGCTCC TTTGTTCCAT
TACTTTAGCG CAAGCTATTT AGGAACTATT AATTTTCTTG TTCCACAGGG CGAAGGTGGA
GTTGGGGGCG AGCTTTCAAA ACAGATTAGT TCCGTGAGCG GTTTTAAGGT CAATCTTGAA
GAAGTTGATC AACAAACTAT GCGTAAGCGT ATTAGTGAAG GTAAGTATGA TCTTGCGCTT
ACTACGAGCA ATCGTACTTT AGATGAAGGC ATGTTTGCAG AAAGCGGTTC TCCGTTCGTT
TTGCAAGACG CGCGTGCTCA ACAAGCTTGG ACCGATGCGG TTCATTCTAA GAATGCAAAC
GAATATGAGA CAAATGCTCG TGCATATGCG CGCGAAGTAA GCAATAATGC TGCAGCTCAC
TGGTTATATG CTCGAAAGAG CATTATGGCT GTAAAGTCTA ATGTAAGCGG CTATACGAAA
AATATGACGG ATCAGCTTCT GCCATTGCAG AGCATAGTGG TGAAATAG
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| Protein sequence | MVVSVIMSGI LWCGWQMYQG HSPFAAIMHP ASNSVLKVGL RTAPESLDIR NDDSDALQQA
LIGNVYETLV KRGDDNSLQP GLAKSWDISK DGLTYRFNLR QGVHFSNGSE MTSNSVLQSL
KQGITNNYPG YSALTNIKTV NNPDDYTLVI TLNNPDALLL RRLAGRVGIV YDTKSMIDYA
SAALGTGPFT VSDYNKGNSL VLLRNDKYWG TPASCASITL QYFNSDTALA EAMEKGNIQM
AVPLEGNENK RLAAVANTQM VEGQSTRVRF IAINTTVSSI FCDEQARKAA RYALNAQTVL
AADGNGGVPV GGPIDPLSTG YEDLNGLYPY NPGKAAPLFH YFSASYLGTI NFLVPQGEGG
VGGELSKQIS SVSGFKVNLE EVDQQTMRKR ISEGKYDLAL TTSNRTLDEG MFAESGSPFV
LQDARAQQAW TDAVHSKNAN EYETNARAYA REVSNNAAAH WLYARKSIMA VKSNVSGYTK
NMTDQLLPLQ SIVVK
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