Gene HMPREF0424_0190 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0190 
Symbolnth 
ID8709027 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand+ 
Start bp211640 
End bp212314 
Gene Length675 bp 
Protein Length224 aa 
Translation table11 
GC content38% 
IMG OID646482309 
Productendonuclease III 
Protein accessionYP_003373454 
Protein GI283782700 
COG category[L] Replication, recombination and repair 
COG ID[COG0177] Predicted EndoIII-related endonuclease 
TIGRFAM ID[TIGR01083] endonuclease III 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATTTATC AAAGTTCTAA TATGCGAGAA TCAAAACAAG CGAAATTAGC TCGTATTTAT 
GCAGAGTACG ATTTATTGTG CAAAGAAATA CCGGAACCTA AGTGTGCATT AAATTTCAAA 
AATCCATTTG AGCTACTAAT TGCTACTGTA TTAAGCGCGC AAACTACAGA TAAGCGTGTG 
AATATCGTGA CGCCTGAACT CTTTTCTATT TTCCCCAACG CGAGTTCTTT AGCTGCTGCT 
CCTGTATCTC AAGTTGAGTC AATTATTTAC CCTCTCGGAT TTTATAGAGT AAAAGCACAG 
AACATTATTT CATTATCTGC ATGTTTGCTT AATAATTTTT CTGGTATAGT GCCATCAAAT 
ATGGAAGCTT TAATATCGTT GCCAGGTGTT GGTCGTAAAA CTGCCAATGT CGTTCTTGGC 
AACGCATTTG GATTACCGGG GTTTCCTGTA GATACTCACG TAATACGTGT TACAGGTCGT 
CTTGGTTGGC GTAAGGTTCA GAATCGTCCA AATCCTGTTG CTATTGAGCG CGAAATAACT 
GCTTATTTTG CTCCTAAAGA GTGGACTAAT CTCTCTCATA GACTTATTTT GCATGGCAGA 
AAAATTTGCA CTGCTCGGAA TCCAAAATGT GTTTCATGCC CTTTAAATAC AACATGTCCG 
TCGGCAATTA TTTAA
 
Protein sequence
MIYQSSNMRE SKQAKLARIY AEYDLLCKEI PEPKCALNFK NPFELLIATV LSAQTTDKRV 
NIVTPELFSI FPNASSLAAA PVSQVESIIY PLGFYRVKAQ NIISLSACLL NNFSGIVPSN 
MEALISLPGV GRKTANVVLG NAFGLPGFPV DTHVIRVTGR LGWRKVQNRP NPVAIEREIT 
AYFAPKEWTN LSHRLILHGR KICTARNPKC VSCPLNTTCP SAII