| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0184 |
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| Symbol | |
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| ID | 8709466 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 203809 |
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| End bp | 204750 |
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| Gene Length | 942 bp |
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| Protein Length | 313 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 646482303 |
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| Product | putative OpcA protein |
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| Protein accession | YP_003373448 |
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| Protein GI | 283782694 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3429] Glucose-6-P dehydrogenase subunit |
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| TIGRFAM ID | [TIGR00534] opcA protein |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTATCA ACCTTCCTGA TACCAATACA AGCAAAATTG CAGCAAAAAT CGACGAATTG
CACGAAGAGC GCGGCGAATC CGCTACTGGT CGAGTGCTCA CTTTGCTTAT TGATACAACT
CTTAAAGAAT TAGAGCATGC ACTTGATGCA GCAAACGCAG CTAGTCGCGA GCATCCTTGC
CGAGTTATTG CAATGGTTCG AGATTGGTCT AGCGAACACG CTGCTGAGCG CGGTGAAGTT
GTGCCAAATC TTGATGCTCA AGTGCGTTTT GGCGCAGATG CTGGAGCTGG TGAAATTATT
ATTTTGTATC CGCACAACGG TTTAGTTCGT CATCCGGATA CGCTTGTTAT TCCACTACTC
GTGCCAGATG CGCCGATTGT TGCATGGTGG CCAACAAACG CTCCTGAAGA TCCTGCTCAC
GATTTGCTTG GAGCTATGGC AAGTAGCAGA ATTACTGACG CACAGCGAGC AGACGATACT
CTTAAAACTG TGCAAAACTT GCGCAAAAAC TGGTCTCCGC AAGATGCAGA TTTGTCTTGG
ACGCGTTTAA CTCCTTGGCG CGCGTTACTT GCTTCTATGC TCGATCAACC TCCACATTTG
CCTATTCTTA GCGCGAAGAT TGTGGGTCCT ACTCATTACG TATCTTTGCA CTTACTGGCA
GCTTGGCTTA AGAGTAGCTT GCATGTTCCT GTAGAAATAG TTGAAAATCC TGAAGCTCAA
GCTATTACTT CCGTAACTTT AGAACGCGAG GATGGCACAT TGTCACTCAC TCGCCCTGCT
GGCGGAGATC AAGCTTTGAT TAGTCTGCCT GGACAGGCTG CACAACCTAT TGCGCTTCCT
ATTCGCACTC TGGATGATTG CTTAAGCGAA GAATTGCGAC GCATTGATCC GGACGAAATT
TATGCGCAGC TGGTTAGAGA TAATCCTGCA GAAAATGCGT GA
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| Protein sequence | MIINLPDTNT SKIAAKIDEL HEERGESATG RVLTLLIDTT LKELEHALDA ANAASREHPC
RVIAMVRDWS SEHAAERGEV VPNLDAQVRF GADAGAGEII ILYPHNGLVR HPDTLVIPLL
VPDAPIVAWW PTNAPEDPAH DLLGAMASSR ITDAQRADDT LKTVQNLRKN WSPQDADLSW
TRLTPWRALL ASMLDQPPHL PILSAKIVGP THYVSLHLLA AWLKSSLHVP VEIVENPEAQ
AITSVTLERE DGTLSLTRPA GGDQALISLP GQAAQPIALP IRTLDDCLSE ELRRIDPDEI
YAQLVRDNPA ENA
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