| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0177 |
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| Symbol | |
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| ID | 8709220 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 196267 |
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| End bp | 198492 |
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| Gene Length | 2226 bp |
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| Protein Length | 741 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 646482296 |
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| Product | ribonucleoside-diphosphate reductase, alpha subunit |
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| Protein accession | YP_003373441 |
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| Protein GI | 283782687 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0209] Ribonucleotide reductase, alpha subunit |
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| TIGRFAM ID | [TIGR02506] ribonucleoside-diphosphate reductase, alpha subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATAGCA CGGATCCGAT GAGCGAATCT ACTTCGCTTA ATCTTGATCA CACTGATTCT
GCAAGCGCAA CTGCCAGTAC AACAGCAGAG CGCATCCGCA ACAGCCGCGA CTACCACGTT
CTTAACGCTA TGCTCGGTCT TTTTGACCCA GAAAAAGGCA TTCAGTTTGA TAAAGATCAA
GAAGCAGAAA AGCTTTACGT TTCGGGTTAC GTGCAAGAAC ATAGCATGAA GTTTGCTTCA
ACTCGCGAGC GCTTGAACTA TTTGATTGAC AACTATTACT ACAACGGTAA CGTATTCAAC
AAATACAGCG ATGAATTTCT CGATAAATTC TACGAGCATG CGGAAGCCGC ACACCACACT
TTTGGCACAT TCTTGGGTGC TTTTAAGTTC TACACTTCTT ACGCTTTGAA GACTTTCGAC
GGCAAGCAGT ATTTGGAAAA CTTCGCTCAG CGCGCAGCTG CTGTTGCATT GGAACTTGCA
GATGGTGACG AAAAAGCAGC GACCAACTAC TTAGACGAAA TGCTTGCAGG CCGCTTCCAG
CCAGCCACCC CAACGTTCTT GAATCTTGGT AAAGCTCAGC GCGGCGAAGC TGTGAGCTGC
TTCCTCGTGC GTTTGGAAGA TAACATGGAG TCTATTGCGC GCGGAATTAA TTCTGCTTTG
CAGCTTTCTA AGCGTGGCGG CGGCGTGGCT CTGCTTCTTA CGAATTTGCG CGAGCTTGGC
GCTCCTATTA AGCGAATCGA GAATCAGTCG AGTGGCGTTG TGCCTGTTAT GAAGCTTTTG
GAAGATTCAT TCTCTTACGC TAATCAGCTT GGCGCTCGAC AGGGTGCAGG TGCAGTGTAT
ATTAGCGCGC ATCACCCAGA TATTATGCGT TTCCTCGATG CTAAGCGCGA GAACGCAGAC
GAGAAGATTC GTATTAAGTC GCTTTCTTTG GGTGTTGTGA TTCCAGATAT TACTTTTGAG
CTTGCTAAGC GTAAGGAAAA GATGGCTTTG TTTAGTCCTT ACGATGTTGA GCGCGAATAT
GGCAAGCCTT TTGCAGATAT TTCTGTTACC GAGCATTACG ATGAGATGGT TGCAAATCCT
CGTATTCACA AGAAGTACAT CGACGCTCGC GAATTCTTTA TGACGATTGC AGAAATTCAG
TTCGAGTCTG GCTATCCTTA CATTTTGTTT GAGGATACTG TGAATCGCAC GAATCCTATT
GAGGGTCGCA TTACTATGAG CAACTTGTGC TCTGAGATTT TGCAAACTCA GGAAGCAAGC
ACTTATAACG CCGACTTGTC TTATAGCCAC GTTGGTCGCG ATATTTCTTG CAATCTTGGC
TCTCTTAATA TCGCTAAGGC AATGGATGGC GACTTGGGCA CAAGCGTTGA TTTGGCTGTG
CGTGCGCTCA CTTCTGTTTC GGAGCATACT TCTATTGATT CTGTGCCTTC GATTCGTCGC
GGTAACGCGG AAGGTCACGC TATTGGCTTG GGTCAAATGA ATTTGCACGG TTTCCTTGCG
CGTGAACACA TGCAGTACGG AAGCGAGGAA GCTCTTGACT TTACAGACAT GTACTTTATG
ACGGTTGCTT ACCACGCTTA TAAGGCTTCT CACGCTTTGG CTGTAGAGCG CGGCCACGCT
TTTGCAAACT TTAAGACGAG CGCTTACGCT AAGCCTGCAG GAAAAGGCAA CTACTTCGAT
AAGTACACAG ATGGCAGCCG CTCGCTTGAG CCTAAAACTC AAAAAGTTCG CGATTTGTTT
GCCCGTTTTA ACGTTGCGAT TCCAACCGTC AGCGATTGGG AGCAGTTGCG CGACGAGATT
TTGAGCGATG GCATTTACAA CGAGTATTTG CAAGCTGTTC CTCCAACTGG CTCAATCTCG
TACATCAACC ATTCCACAAG TTCAATCCAC CCGATTGCTT CTCGCATTGA GATTCGCAAA
GAAGGCAAGG TTGGACGCGT CTACTACCCT GCTGCATACA TGACGAACGA CAATATGCAG
TACTTTAAGG ACGCCTATGA GATTGGCTGG AAGGCAATTA TTGACACTTA TGCCGAAGCA
ACTCAGCATG TGGATCAAGG ATTGTCGCTT ACTTTGTTCT TCCCAGACAC TACGACTACT
CGCGATTTGA ACAAGGCTCA GATTTACGCA TGGCGTAAGG GCATTAAGAC TCTTTACTAC
ATTCGTATTC GCCAGAAGGC TTTGGAAGGT ACGGAAATCG AAGGTTGCGT AAGCTGCACG
CTGTAA
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| Protein sequence | MNSTDPMSES TSLNLDHTDS ASATASTTAE RIRNSRDYHV LNAMLGLFDP EKGIQFDKDQ
EAEKLYVSGY VQEHSMKFAS TRERLNYLID NYYYNGNVFN KYSDEFLDKF YEHAEAAHHT
FGTFLGAFKF YTSYALKTFD GKQYLENFAQ RAAAVALELA DGDEKAATNY LDEMLAGRFQ
PATPTFLNLG KAQRGEAVSC FLVRLEDNME SIARGINSAL QLSKRGGGVA LLLTNLRELG
APIKRIENQS SGVVPVMKLL EDSFSYANQL GARQGAGAVY ISAHHPDIMR FLDAKRENAD
EKIRIKSLSL GVVIPDITFE LAKRKEKMAL FSPYDVEREY GKPFADISVT EHYDEMVANP
RIHKKYIDAR EFFMTIAEIQ FESGYPYILF EDTVNRTNPI EGRITMSNLC SEILQTQEAS
TYNADLSYSH VGRDISCNLG SLNIAKAMDG DLGTSVDLAV RALTSVSEHT SIDSVPSIRR
GNAEGHAIGL GQMNLHGFLA REHMQYGSEE ALDFTDMYFM TVAYHAYKAS HALAVERGHA
FANFKTSAYA KPAGKGNYFD KYTDGSRSLE PKTQKVRDLF ARFNVAIPTV SDWEQLRDEI
LSDGIYNEYL QAVPPTGSIS YINHSTSSIH PIASRIEIRK EGKVGRVYYP AAYMTNDNMQ
YFKDAYEIGW KAIIDTYAEA TQHVDQGLSL TLFFPDTTTT RDLNKAQIYA WRKGIKTLYY
IRIRQKALEG TEIEGCVSCT L
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