| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0176 |
|---|
| Symbol | |
|---|
| ID | 8709650 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Gardnerella vaginalis 409-05 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013721 |
|---|
| Strand | - |
|---|
| Start bp | 195105 |
|---|
| End bp | 196184 |
|---|
| Gene Length | 1080 bp |
|---|
| Protein Length | 359 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 646482295 |
|---|
| Product | ribonucleoside-diphosphate reductase, beta subunit |
|---|
| Protein accession | YP_003373440 |
|---|
| Protein GI | 283782686 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0208] Ribonucleotide reductase, beta subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAGAAC TCAGCCCAAC CGAGCTTAGA AGTAGCCTCG ATAAGCCTTT CGGCACAAAT
CGCGTAATCG CAGATGACGC TATGATGGCA GCTTCTATCA CACCATCTCA GTACCGCTAC
CATCACGGAT CGCGCGTACG CCCAGTTAAT TGGAATAATA TTGTTGACGA CAAGGATTTG
GACGTTTGGA ATCGCCTTAT TGCTAACTTC TGGCTTCCAG AAAAGGTTCC GCTGAGCAAC
GATATTCCTT CTTGGCGTTC CCTCACCGAT CTTGAGCGCA AGACCACTAC TCGCGTTTTT
ACAGGCTTGA CTTTGCTTGA TACCAGCCAG GCAACTATTG GCGAGCTTTG CCAGATTGAG
CACGCTCGCA CGGAGCACGA GCAGGCTATT TACACGAATA TTGCTTTTAT GCAGTCGATT
CACGCTCGCT CCTACTCCTC TATTTTCTCT ACTCTTTGCT CTAGCGAAGA GATTGACGAA
GCTTATCGTT GGGCTGTTGG CAACGACGTT TTGCAGCAGC GCGTCACCAC TGTGCTTTGC
GAGTATGAGA GCGAAGATCC GCTTAAGCGC AAGATTGCTG CAACTATGCT TTCTTCGTTG
CTTCTTTACG CGGGATTCTA TCTTCCGCTT TACTTTGCTT CTCGCGGCAA GATGATGAAC
ACTGCCGATA TGATTCGCTT GATTTTGCGC GATAAGGCAA TTCACGGCTA TTATTCGGGC
TACAAGTTCC AGCGCGGTTT GGAGCTTAGA AGCGAGAACG ATAAGAAGAA TCTTGAAAAG
TTCACTATGA ACTTGCTCGA CACTTTGTAT GATCTGGAAG TTGAGTATTC TGGTCAGATT
TATGAAGGAT TTGACTTCCA CGATGACGTT TTTGACTTCG TGCGTTACAA CGCTAACAAA
GCTTTAATGA ACCTTGGCTA CCCTGCTAAG TACAGCGAAG AAGAAACTCA CGTAAGCCCA
GAAATTCTCG CTGCTCTTTC TCCTGCAGCC GACGAAAATC ACGACTTCTT CTCCGGCTCT
GGTTCCAGCT ACATTATGGG CAAGTCAGTT GAAACCGACG ACGATGATTG GGATTTCTAA
|
|---|
| Protein sequence | MTELSPTELR SSLDKPFGTN RVIADDAMMA ASITPSQYRY HHGSRVRPVN WNNIVDDKDL
DVWNRLIANF WLPEKVPLSN DIPSWRSLTD LERKTTTRVF TGLTLLDTSQ ATIGELCQIE
HARTEHEQAI YTNIAFMQSI HARSYSSIFS TLCSSEEIDE AYRWAVGNDV LQQRVTTVLC
EYESEDPLKR KIAATMLSSL LLYAGFYLPL YFASRGKMMN TADMIRLILR DKAIHGYYSG
YKFQRGLELR SENDKKNLEK FTMNLLDTLY DLEVEYSGQI YEGFDFHDDV FDFVRYNANK
ALMNLGYPAK YSEEETHVSP EILAALSPAA DENHDFFSGS GSSYIMGKSV ETDDDDWDF
|
|---|
| |