| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0161 |
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| Symbol | |
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| ID | 8709634 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 182953 |
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| End bp | 183597 |
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| Gene Length | 645 bp |
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| Protein Length | 214 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 646482280 |
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| Product | pathogen-specific surface antigen family protein |
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| Protein accession | YP_003373425 |
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| Protein GI | 283782671 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG3470] Uncharacterized protein probably involved in high-affinity Fe2+ transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.676724 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGAATA ATAAAATGAT GGCAATTGCA GCTTTGGCTC TTGCTGGACT GCTTGCGCTC
GCTGGCTGCG GTTCTAATGG CAATTCAGCT AAAACTGATG CTAAGTCACA AGCAACCGAG
CAGAAGGCTG ACGACAAGGC TGACGACAAG GGCGGTGATA AGGGCTTTGA GGAGGTTCCA
GTTGGTCCTC ACCAAGATCA GAACATTGGA CCTCTTACTA TTGGCGCTGT GTACTTCCAG
CCAGTGGACA TGGTTCCAGC TGGTATGGGC TTGAAGGCAA GCGAAGCAAG CTTCCACCTT
GAAGCCGATA TCCACGCTAA CCAAAAAGGT ACAAAGCTTG GCTACGGTAA GGGCGAGTTC
ATTCCAGATT TGACTGTGAA TTATGAGATT GTCGATAAGG CAAGCGGCGA ATCCGTTGGT
AAGGGCACGT TTATGCAGAT GAACGCTTCC GATGGTCCTC ACTACGGTGC AAACGTTAAG
CTTGACAAAG CTGGAAATTA CAAGCTCGTG CTTTCTATTG AATCCCCAGA AAAGAAGGGT
TGGATGCTTC ACGTCGATCC TGCTACCGGC GTAACCGGTC GCTTCTGGAC TGAGCCAATT
AAGGCAACCT TCGACGATTG GAAGTACACT CCTCGTCAGT GGTAG
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| Protein sequence | MKNNKMMAIA ALALAGLLAL AGCGSNGNSA KTDAKSQATE QKADDKADDK GGDKGFEEVP
VGPHQDQNIG PLTIGAVYFQ PVDMVPAGMG LKASEASFHL EADIHANQKG TKLGYGKGEF
IPDLTVNYEI VDKASGESVG KGTFMQMNAS DGPHYGANVK LDKAGNYKLV LSIESPEKKG
WMLHVDPATG VTGRFWTEPI KATFDDWKYT PRQW
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