| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0153 |
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| Symbol | |
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| ID | 8708928 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 174289 |
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| End bp | 175338 |
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| Gene Length | 1050 bp |
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| Protein Length | 349 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 646482272 |
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| Product | thiamine biosynthesis lipoprotein, ApbE family |
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| Protein accession | YP_003373417 |
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| Protein GI | 283782663 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG1477] Membrane-associated lipoprotein involved in thiamine biosynthesis |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.191913 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTGGGA ATGTAATGGC GATTGAGCGC GCGCTTGGCA CGGGGATTAT TATCTCTAGC
AGCGTGCCGA TTTCGCAGCG CGTGCAGAAT CGGATTCGCG ATTTTATTGA AGAGTATGAA
TCGGTGCTTT CGCGCTTTCG TGCGGATTCG CTTGTTTCGC GCATGGCTTG TGCGGAGCAT
GGCGGCGAGT TTGAGTTTCC AACGTGGGCT CAGCCGCTTT TTGCGATCTA TAGCGAGTTT
TACGATGCCA CGCACGGTGC TTTTGACGCT TGTATTGGTG CGGATCTGCT TGCGCTTGGC
TACAACAATT CTGTGCAATT CGTTCCGGAG TCGGCAGCTA GCGCAGGCAA GAACGATAAT
AGCAGCAGCT ACAGTTGCTC TAACTATCGC CGCGCTCTGC CAGTTAAGTG GGCAGATATT
TCGCGAGATG ACGGCGGCGC AACGCTTCAC ACAAATAAGC CAGTGCAGCT TGATTTTGGT
GCAGCCGGTA AGGGCTATTT TGTAGATCTT GTAATGCAGA TTATTAAAGA GGAGTTTAGT
GACGATTCGA CTGCGAATAA TTATTTTCCT TCGGATTTTG ATTTTTTGGT AAACGCAGGC
GGAGATATGC GCGCTTGCTT TAGCAAAAAG AATAGTCAAA TAAAAGTTGC GCTAGAAAAT
CCTTTTGACA CAACGCAAGC GGTAGGTGTG GCATCAATCG CAAGCGGAGC GTTGTGTGCT
TCGTCTGCTG CAAGAAGGCG CTGGAAAGTA AAAGACACAA ATTGCCTTGC AGCTGATGCT
TTTGAATCTA ATGTAGTTGC AACTCACCTT ATCAACGCTT TAGATGGCGT ACCTTCGCAA
AAACTTTCTG CAAGCTGGAC TTACGTTCCT GCTAAAACAT GTGCTTTTCC GACTGCTTAC
GCCGATGCGC TCGCAACTGC GCTTTTTATT TCGCAAGAAA GCGATTTGCA AAAAATCGCG
CAAACTACCG GCGCTGAGTT TGCTGTAATG CAGCCAAATC ATGCGCTTCG CAAAACGTGT
GCTTTCCCAG CGCGCTTTTT TGCTGAATAA
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| Protein sequence | MFGNVMAIER ALGTGIIISS SVPISQRVQN RIRDFIEEYE SVLSRFRADS LVSRMACAEH
GGEFEFPTWA QPLFAIYSEF YDATHGAFDA CIGADLLALG YNNSVQFVPE SAASAGKNDN
SSSYSCSNYR RALPVKWADI SRDDGGATLH TNKPVQLDFG AAGKGYFVDL VMQIIKEEFS
DDSTANNYFP SDFDFLVNAG GDMRACFSKK NSQIKVALEN PFDTTQAVGV ASIASGALCA
SSAARRRWKV KDTNCLAADA FESNVVATHL INALDGVPSQ KLSASWTYVP AKTCAFPTAY
ADALATALFI SQESDLQKIA QTTGAEFAVM QPNHALRKTC AFPARFFAE
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