| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0152 |
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| Symbol | |
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| ID | 8709792 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 173008 |
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| End bp | 174258 |
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| Gene Length | 1251 bp |
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| Protein Length | 416 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 646482271 |
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| Product | Fic family protein |
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| Protein accession | YP_003373416 |
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| Protein GI | 283782662 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3177] Uncharacterized conserved protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.19734 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATTACA AAACAATACG CAAAATAGTT GCAATGTCTA AAAGTAATGC AAAACCTTGT
GATATTGCGG AAGAAGAGTA TTGCTTGCGC ATTGATAATC CAGTGACGTA TCGTTCTGGA
ATCGTATTTG ATGCGCATGA GATTTTTGCA ATGTGCGTAA CGGATCTTGT GACGTATATG
AATTATATTG CGAATACTGA AAAAGCGGTT GAAAAAGCGT GGAACGAGTT GCCGCGGTTT
GCTCAGCGCG AGTATTTAAT GCAACTTATT GCAAAAGAAG TGCAAAATAC CAACATTATT
GAAGGTGTTC ACAGCACTAG AAAAGAGCTT TCCAAAGCAC TTGATGCTGC AAACGAGCAG
AATAATCATA CGCGTTTTAG TGAATTTACT AAGCTTTTTC TCGAGCTTGC GGATTCAAAT
GAATGTGACA CTTCGATTCC ACAAACCTTG CAAGATATAC GAAAAATCTA CGACAGTATT
ATGCAGGGCG AATTAGAAGC AAATAATATT CCAGATGGCG AGATTTTTAG GAGTGGAAAA
GTAAGTATTC GTGATGGTGC AAATAATGTA GTGCACGATG GCGATGCAAC GGAAGCAGAA
ATTCAAGATC ATTTAACACA GATGTTGAGT TTGATGAATA GCAGCGAAGT TCCAACGCTT
ATTAAGGCGT GCATGTGCCA CTATGCTTTT GAGAGCGTGC ACCCGTTTTA CGATGGAAAC
GGTAGAACTG GGCGGTTTTT GCTTGCTTTG CAATTGCATG AGCATCTTTC GATGCCAACA
ATTTTGAGCT TAAGCTCTAT AATTTATGCA GAAAAATCTG GATACTATGC TGCTTTTTCT
AAAGCTCAGG AGCTGTTTAA TTGCAATGAT TTAACTATGT TTTGTTGCAC AATGTTGGAA
TATATTGTAA AAGCACAGGG CGAAGTGTTT GAGAATATTA GTGTGCAATT AAAGCACATT
ATTTACTGTA TGGGTAAGCT GCGTGAGCTT TTCTCAGAGG AAGAAATTTC TAAAGTGCAG
CGTGAAGTTC TGTCTATTTT GTTGCAAAAT AAGCTTTTTT CGTATAATCC AACTCCGATG
ACTCGCAAGC AATTAAGCGA ATATGTTGGC AATGCAATTG CTGAGCAGGT TGGTGAGAGA
AAGATTGTGA GTGCGCTTAA CGGTTTGATT GAGCTTGGAA TGGTTGATTC TATTGGCGAA
CGCCCTATTC GGTATGAGCT TTCTAAAAAA GCGAATGAAA TGTTTGCGTG A
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| Protein sequence | MDYKTIRKIV AMSKSNAKPC DIAEEEYCLR IDNPVTYRSG IVFDAHEIFA MCVTDLVTYM
NYIANTEKAV EKAWNELPRF AQREYLMQLI AKEVQNTNII EGVHSTRKEL SKALDAANEQ
NNHTRFSEFT KLFLELADSN ECDTSIPQTL QDIRKIYDSI MQGELEANNI PDGEIFRSGK
VSIRDGANNV VHDGDATEAE IQDHLTQMLS LMNSSEVPTL IKACMCHYAF ESVHPFYDGN
GRTGRFLLAL QLHEHLSMPT ILSLSSIIYA EKSGYYAAFS KAQELFNCND LTMFCCTMLE
YIVKAQGEVF ENISVQLKHI IYCMGKLREL FSEEEISKVQ REVLSILLQN KLFSYNPTPM
TRKQLSEYVG NAIAEQVGER KIVSALNGLI ELGMVDSIGE RPIRYELSKK ANEMFA
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